Staphylococcus aureus strain MW2. The S. aureu MW2 consists of a circular chromosome of 2.82 Mb and a plasmid of 20.7 kb in length, respectively.
Read source
- The sequence reads were from the supplemental data (supp data) of David Hernandez et al.'s publication (Genome Research 2008). The data set is made up of 3.86 million of 35-bp reads.
Sequence assembly
| Software |
Version |
Parameters |
Download |
| ABySS |
1.3.0 |
k=23 |
Abyss |
| Velvet |
1.1.04 |
k=23 min_contig_lgth=100 scaffolding=no |
Velvet |
| Edena |
3 |
m=21 |
Edena |
| SOAPdenovo |
1.05 |
K=23 M=3 |
SOAPdenovo |
Merged File: S_Contigs
Contig integrator
Evaluation
- Staphylococcus aureus strain MW2
- Evaluate by Mauve Assembly Metrics
- How to score genome assemblies using the Mauve system
- Score with Mauve metrics:
| Name |
NumContigs |
NumAssemblyBases |
NumMisCalled |
NumUnCalled |
NumGapsRef |
NumGapsAssembly |
TotalBasesMissed |
PercBasesMissed |
ExtraBases |
PercExtraBases |
BrokenCDS |
IntactCDS |
ContigN50 |
ContigN90 |
MaxContigLength |
| Velvet |
1152 |
2775301 |
49 |
0 |
1010 |
866 |
89319 |
3.1438 |
15087 |
0.5436 |
230 |
2421 |
5337 |
1329 |
22892 |
| ABySS |
929 |
2769174 |
41 |
0 |
796 |
601 |
95493 |
3.3611 |
8641 |
0.312 |
171 |
2480 |
7793 |
1635 |
32717 |
| Edena |
931 |
2757686 |
9 |
0 |
705 |
711 |
99275 |
3.4942 |
6966 |
0.2526 |
188 |
2463 |
6962 |
1672 |
37100 |
| SOAP |
944 |
2781524 |
47 |
0 |
853 |
597 |
79607 |
2.802 |
11796 |
0.4241 |
166 |
2485 |
6386 |
1614 |
26967 |
| CISA |
692 |
2782831 |
46 |
0 |
596 |
415 |
80370 |
2.8288 |
12281 |
0.4413 |
106 |
2545 |
10284 |
2356 |
42008 |
| Minimus2 |
569 |
2769617 |
71 |
0 |
531 |
402 |
85573 |
3.012 |
7624 |
0.2753 |
107 |
2544 |
10672 |
2578 |
42022 |