Staphylococcus aureus strain MW2. The S. aureu MW2 consists of a circular chromosome of 2.82 Mb and a plasmid of 20.7 kb in length, respectively.
Read source
- The sequence reads were from the supplemental data (supp data) of David Hernandez et al.'s publication (Genome Research 2008). The data set is made up of 3.86 million of 35-bp reads.
Sequence assembly
| Software |
Version |
Parameters |
Download |
| ABySS |
1.3.0 |
k=23 |
Abyss |
| Velvet |
1.1.04 |
k=23 min_contig_lgth=100 scaffolding=no |
Velvet |
| Edena |
3 |
m=21 |
Edena |
| SOAPdenovo |
1.05 |
K=23 M=3 |
SOAPdenovo |
Merged File: S_Contigs
Contig integrator
Evaluation
- Staphylococcus aureus strain MW2
- Evaluate by Mauve Assembly Metrics
- How to score genome assemblies using the Mauve system
- Score with Mauve metrics:
| Name |
NumContigs |
NumAssemblyBases |
DCJ_Distance |
NumMisCalled |
NumUnCalled |
NumGapsRef |
NumGapsAssembly |
TotalBasesMissed |
%Missed |
ExtraBases |
%Extra |
BrokenCDS |
IntactCDS |
ContigN50 |
ContigN90 |
MaxContigLength |
Blast_IntactCDS |
| Velvet |
1152 |
2775301 |
1124 |
49 |
0 |
1010 |
866 |
89319 |
3.1438 |
15087 |
0.5436 |
230 |
2421 |
5337 |
1329 |
22892 |
2265 |
| ABySS |
929 |
2769174 |
898 |
41 |
0 |
796 |
601 |
95493 |
3.3611 |
8641 |
0.312 |
171 |
2480 |
7793 |
1635 |
32717 |
2364 |
| Edena |
931 |
2757686 |
882 |
9 |
0 |
705 |
711 |
99275 |
3.4942 |
6966 |
0.2526 |
188 |
2463 |
6962 |
1672 |
37100 |
2331 |
| SOAPdenovo |
944 |
2781524 |
917 |
47 |
0 |
853 |
597 |
79607 |
2.802 |
11796 |
0.4241 |
166 |
2485 |
6386 |
1614 |
26967 |
2371 |
| CISA |
665 |
2776133 |
635 |
48 |
0 |
571 |
388 |
79805 |
2.8089 |
5675 |
0.2044 |
100 |
2551 |
10533 |
2460 |
42008 |
2463 |
| Minimus2(EVAS) |
569 |
2769617 |
559 |
71 |
0 |
531 |
402 |
85573 |
3.012 |
7624 |
0.2753 |
107 |
2544 |
10672 |
2578 |
42022 |
2468 |