Saureus 35 all2

Name	NumContigs	NumRefReplicons	NumAssemblyBases	NumReferenceBases	NumLCBs	DCJ_Distance	NumDCJBlocks	NumSNPs	NumMisCalled	NumUnCalled	NumGapsRef	NumGapsAssembly	TotalBasesMissed	PercBasesMissed	ExtraBases	PercExtraBases	MissingChromosomes	ExtraContigs	NumSharedBoundaries	NumInterLcbBoundaries	BrokenCDS	IntactCDS	ContigN50^	ContigN90	MinContigLength	MaxContigLength	N50^	Blast	Units(>200)	N50^	cor.Units	cor.N50	Error,(Indel>=5,Inv,Rel)
A_E.m2.fasta	667	2	2762382	2841116	4	653	655	18	18	0	574	468	92048	3.2399	6469	0.2342	0	14	1	2	123	2528	10119	2225	105	42009	10225	2420	569	10009	571	9973	2,(0,0,2)
A_S.m2.fasta	697	2	2775030	2841116	7	682	684	62	62	0	648	406	84585	2.9772	7622	0.2747	0	17	1	3	126	2525	9423	2182	104	32720	9580	2421	604	9342	606	9342	2,(0,0,2)
A_V.m2.fasta	845	2	2772482	2841116	4	823	825	61	61	0	782	571	93028	3.2743	10372	0.3741	0	22	1	2	154	2497	8584	1846	100	32722	8608	2377	691	8424	693	8415	2,(0,0,2)
E_A.m2.fasta	667	2	2763167	2841116	4	652	654	22	22	0	574	468	92035	3.2394	7239	0.262	0	15	1	2	122	2529	10119	2233	105	42009	10225	2421	569	10009	571	9973	2,(0,0,2)
E_S.m2.fasta	634	2	2769005	2841116	6	622	624	57	57	0	581	426	85894	3.0232	7220	0.2607	0	12	1	3	111	2540	9770	2300	105	40391	9822	2428	562	9428	564	9428	2,(0,0,2)
E_V.m2.fasta	716	2	2765903	2841116	4	701	703	31	31	0	653	536	92995	3.2732	9991	0.3612	0	16	1	1	142	2509	9030	2039	105	40391	9061	2400	615	8780	617	8776	2,(0,0,2)
S_A.m2.fasta	697	2	2775029	2841116	10	682	684	67	67	0	642	406	80819	2.8446	7539	0.2717	0	18	1	5	120	2531	9423	2182	104	32720	9580	2421	604	9342	606	9342	2,(0,0,2)
S_E.m2.fasta	635	2	2769186	2841116	9	624	626	46	46	0	583	429	86112	3.0309	7199	0.26	0	15	1	3	112	2539	9770	2300	105	40391	9823	2428	562	9428	564	9428	2,(0,0,2)
S_V.m2.fasta	874	2	2777372	2841116	9	858	860	68	68	0	814	622	83103	2.925	11879	0.4277	0	19	1	4	159	2492	6721	1690	103	26969	6742	2361	756	6636	758	6624	3,(0,0,3)
V_A.m2.fasta	845	2	2772484	2841116	4	823	825	47	47	0	780	570	86518	3.0452	10138	0.3657	0	22	1	2	155	2496	8584	1846	100	32722	8608	2377	691	8424	693	8415	2,(0,0,2)
V_E.m2.fasta	716	2	2765120	2841116	4	701	703	35	35	0	652	535	92690	3.2625	9232	0.3339	0	16	1	1	141	2510	9030	2033	105	40391	9061	2399	615	8780	617	8776	2,(0,0,2)
V_S.m2.fasta	874	2	2777373	2841116	11	860	862	67	67	0	815	627	83024	2.9222	11898	0.4284	0	19	1	4	159	2492	6721	1690	103	26969	6742	2361	756	6636	758	6624	2,(0,0,2)
A_E.gaa.fa.fas	956	2	2780500	2841116	4	902	904	126	126	0	796	618	82917	2.9185	10062	0.3619	0	54	1	2	171	2480	7793	1593	100	32726	7814	2340	736	7511	738	7467	2,(0,0,2)
A_S.gaa.fa.fas	962	2	2786249	2841116	4	886	888	92	92	0	816	572	81100	2.8545	10938	0.3926	0	76	1	2	169	2482	7747	1589	100	32720	7793	2348	736	7474	738	7467	3,(0,0,3)
A_V.gaa.fa.fas	940	2	2777413	2841116	4	897	899	39	39	0	838	631	85879	3.0227	11485	0.4135	0	43	1	2	172	2479	7796	1635	100	32722	7818	2343	737	7474	739	7467	2,(0,0,2)
E_A.gaa.fa.fas	974	2	2775165	2841116	4	916	918	41	41	0	742	654	84985	2.9913	8551	0.3081	0	58	1	2	183	2468	6936	1644	100	37100	6965	2304	762	6785	764	6785	2,(0,0,2)
E_S.gaa.fa.fas	987	2	2786291	2841116	4	900	902	39	39	0	782	610	81661	2.8743	11890	0.4267	0	87	1	2	183	2468	6830	1642	100	37109	6936	2318	764	6792	765	6792	2,(0,0,2)
E_V.gaa.fa.fas	981	2	2779621	2841116	4	922	924	70	70	0	796	667	83629	2.9435	11261	0.4051	0	60	1	1	188	2463	6936	1644	100	37109	6969	2314	765	6803	767	6803	2,(0,0,2)
S_A.gaa.fa.fas	947	2	2786157	2841116	9	902	904	49	49	0	843	570	78299	2.7559	12281	0.4408	0	48	1	4	166	2485	6386	1633	100	26967	6427	2349	780	6360	782	6348	3,(0,0,3)
S_E.gaa.fa.fas	953	2	2788709	2841116	9	905	907	45	45	0	839	594	76953	2.7085	13025	0.4671	0	52	1	3	167	2484	6398	1614	100	26967	6427	2348	780	6360	782	6355	3,(0,0,3)
S_V.gaa.fa.fas	948	2	2783925	2841116	9	916	918	46	46	0	854	655	79208	2.7879	12828	0.4608	0	35	1	4	164	2487	6386	1605	100	26969	6440	2350	780	6360	782	6348	3,(0,0,3)
V_A.gaa.fa.fas	1164	2	2781207	2841116	4	1114	1116	179	179	0	1006	841	87098	3.0656	15583	0.5603	0	50	1	2	229	2422	5337	1323	100	22892	5348	2239	941	5312	943	5312	2,(0,0,2)
V_E.gaa.fa.fas	1178	2	2786482	2841116	4	1123	1125	95	95	0	1005	874	83921	2.9538	16628	0.5967	0	56	1	1	229	2422	5335	1319	100	22892	5337	2240	941	5322	943	5322	2,(0,0,2)
V_S.gaa.fa.fas	1187	2	2788297	2841116	4	1119	1121	80	80	0	1005	838	83035	2.9226	15852	0.5685	0	68	1	2	227	2424	5334	1320	100	22892	5337	2246	943	5315	945	5315	2,(0,0,2)

[^] Please note that the ContigN50 calculated by Mauve Assembly Metrics is incorrect (off-by-one error). We have followed the definition of N50 (A contig N50 is calculated by first ordering every contig by length from longest to shortest. Next, starting from the longest contig, the lengths of each contig are summed, until this running sum equals one-half of the total length of all contigs in the assembly. The contig N50 of the assembly is the length of the shortest contig in this list. ref) to calculate N50s. GAGE's N50 was calculated using the total reference genome length rather than the sum total of contig lengths. The GAGE's cor.N50 values were computed after correcting contigs by breaking them at each error.