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Click on <u>Visualization</u> in the menu bar to open '''Maps''' wherein you can create metabolic maps.
Click on <u>Visualization</u> in the menu bar to open '''Maps''' wherein you can create metabolic maps.
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*<font size=3>Metabolic map creaction</font>
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*<font size=3>Metabolic map creaction</font> ([http://sb.nhri.org.tw/GEMsME/Visualization%20step1.html Step-by-step])
Right click on '''Maps''' to <u>Create new map</u>. You can add maps, reactions, metaboltes and lines to create a map onto the main network view window.
Right click on '''Maps''' to <u>Create new map</u>. You can add maps, reactions, metaboltes and lines to create a map onto the main network view window.
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*<font size=3>KEGG map loading</font>
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*<font size=3>KEGG map loading</font> ([http://sb.nhri.org.tw/GEMsME/Visualization%20step2.html Step-by-step])
Right click on '''Maps''' to <u>Load KEGG maps</u> by either <u>Import KEGG map (.xml)</u> or <u>Retrieve KEGG map</u>.
Right click on '''Maps''' to <u>Load KEGG maps</u> by either <u>Import KEGG map (.xml)</u> or <u>Retrieve KEGG map</u>.
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*<font size=3>Map replacement</font>
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*<font size=3>Map replacement</font> ([http://sb.nhri.org.tw/GEMsME/Visualization%20step3.html Step-by-step])
With two lists for metabolite and reaction mapping, you can right click on a map to <u>Replace caption of nodes</u> to convert the map to a customized map. KEGG to Model SEED mapping lists are provided here ([[Image:met KEEGtoSEED.TXT]] and [[Image:rxn KEGGtoSEED.TXT]]), but the mapping lists are not guaranteed to completely correct.
With two lists for metabolite and reaction mapping, you can right click on a map to <u>Replace caption of nodes</u> to convert the map to a customized map. KEGG to Model SEED mapping lists are provided here ([[Image:met KEEGtoSEED.TXT]] and [[Image:rxn KEGGtoSEED.TXT]]), but the mapping lists are not guaranteed to completely correct.
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*<font size=3>Information extraction</font>
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*<font size=3>Information extraction</font> ([http://sb.nhri.org.tw/GEMsME/Visualization%20step4.html Step-by-step])
Right click on a map to <u>Extract reaction information from a model</u> and choose a model you want to extract information from. Then you can show the extra information of reaction in the map by right clicking a reaction to <u>Show extra info.</u>.
Right click on a map to <u>Extract reaction information from a model</u> and choose a model you want to extract information from. Then you can show the extra information of reaction in the map by right clicking a reaction to <u>Show extra info.</u>.
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*<font size=3>Flux visualization</font>
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*<font size=3>Flux visualization</font> ([http://sb.nhri.org.tw/GEMsME/Visualization%20step5.html Step-by-step])
Right click on a map to <u>Load reaction fluxes</u>, the reaction fluxes were be laid on the reactions in the map.
Right click on a map to <u>Load reaction fluxes</u>, the reaction fluxes were be laid on the reactions in the map.
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*<font size=3>Gene expression visualization</font>
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*<font size=3>Gene expression visualization</font> ([http://sb.nhri.org.tw/GEMsME/Visualization%20step6.html Step-by-step])
Right click on a map to <u>Load gene expressions</u>, the gene expressions were be superimposed around the associated reactions in the map.
Right click on a map to <u>Load gene expressions</u>, the gene expressions were be superimposed around the associated reactions in the map.
