You can directly edit/update the content of the imported model.
You can directly edit/update the content of the imported model.
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*<font size=3>Reference database creation</font>
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*<font size=3>Reference database creation</font> ([http://sb.nhri.org.tw/GEMsME/Reconstruction%20step2.html Step-by-step])
Right click on '''Reference databases''' to <u>Import database (.xls)</u>, you can import a reference database provided in [[Reference Databases]] to create your own reference database.
Right click on '''Reference databases''' to <u>Import database (.xls)</u>, you can import a reference database provided in [[Reference Databases]] to create your own reference database.
You can add the information about metabolites and reactions described in a model to the reference database by right clicking on the metabolic model to<u> add rxn&met to the Ref. DB</u>.
You can add the information about metabolites and reactions described in a model to the reference database by right clicking on the metabolic model to<u> add rxn&met to the Ref. DB</u>.
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*<font size=3>Draft reconstruction generation</font>
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*<font size=3>Draft reconstruction generation</font> ([http://sb.nhri.org.tw/GEMsME/Reconstruction%20step3.html Step-by-step])
A draft reconstruction can be generated by mapping a blank reconstruction outputed by [[GBKParser]], containing gene information only, to a reference reconstruction. You just simply right click on the blank reconstruction to<u> Draft a reconstruction</u>
A draft reconstruction can be generated by mapping a blank reconstruction outputed by [[GBKParser]], containing gene information only, to a reference reconstruction. You just simply right click on the blank reconstruction to<u> Draft a reconstruction</u>
GEMsME will extract the reactions whose associated orthologous genes are present in the target organism and obey Boolean statements as described in the reference reconstruction.
GEMsME will extract the reactions whose associated orthologous genes are present in the target organism and obey Boolean statements as described in the reference reconstruction.
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*<font size=3>Reconstruction refinement</font>
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*<font size=3>Reconstruction refinement</font> ([http://sb.nhri.org.tw/GEMsME/Reconstruction%20step4.html Step-by-step])
You can right click on a model to <u>Generate simulation tables</u>, so that a mathematical model including a stoichiometric matrix which describes the connectivity feature of the network as well as default systems boundaries can be generated.
You can right click on a model to <u>Generate simulation tables</u>, so that a mathematical model including a stoichiometric matrix which describes the connectivity feature of the network as well as default systems boundaries can be generated.
