Data-SPAdes

• Evaluated by QUAST

QUAST (QUAST v2.2)

Running QUAST requires Ec_gene_list and NC_000913.fna. There are 4497 genes in total.

• Score with QUAST: With PacBio Long Reads more detail

Basic statistics	Website data	Raw Data	Fractional Data	50X coverage	100X coverage
# contigs	1	14	1	1	1
Largest contig	4638970	4625005	4638970	4638970	4638970
Total length	4638970	4652215	4638970	4638970	4638970
N50	4638970	4625005	4638970	4638970	4638970
Misassemblies
# misassemblies	1	5	1	1	1
Misassembled contigs length	4638970	4625005	4638970	4638970	4638970
Mismatches
# mismatches per 100kbp	0.11	1.06	0.06	0.09	0.06
# indels per 100kbp	0.09	0.61	0.09	0.09	0.09
# N's per 100kbp	0	282.94	0	0.04	0
Genome statistics
Genome fraction (%)	99.983	99.418	99.983	99.983	99.983
Duplication ratio	1	1.013	1	1	1
# genes	4494 + 1 part	4471 + 2 part	4494 + 1 part	4494 + 1 part	4494 + 1 part
NGA50	4638970	2714032	3763133	4209920	3762305
Running Time	42m	2hr 35m	35m	35m	41m

Misassemblies for Adobe reader.

• Score with QUAST: Without PacBio Long Reads more detail

Basic statistics	Website data	Raw Data	Fractional Data	50X coverage	100X coverage
# contigs	2	1	5	3	2
Largest contig	4631220	4633080	4575759	4629108	4638312
Total length	4633146	4633080	4698903	4633082	4640072
N50	4631220	4633080	4575759	4629108	4638312
Misassemblies
# misassemblies	3	7	8	8	5
Misassembled contigs length	4631220	4633080	4577746	4631095	4638312
Mismatches
# mismatches per 100kbp	1.19	1.42	2.84	2.52	2.26
# indels per 100kbp	1.13	0.83	3.26	1.24	1.85
# N's per 100kbp	533.22	1545.02	698.87	703.96	760.38
Genome statistics
Genome fraction (%)	99.345	98.343	99.265	99.136	99.272
Duplication ratio	1.012	1.016	1.021	1.008	1.008
# genes	4465 + 11 part	4395 + 31 part	4460 + 14 part	4451 + 13 part	4455 + 14 part
NGA50	3180483	687701	654008	2675325	694154
Running Time	28m	2hr 01m	31m	28m	32m

Misassemblies for Adobe reader.