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There are eight assemblers, ABySS, CABOG, MaSuRCA, MIRA, SGA, SOPdenovo, SPAdes 2.5, Velvet, used in the data, and the assembly results were downloaded from [http://bioinf.spbau.ru/en/content/spades-25-gage-b-data-sets SPAdes 2.5]
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There are eight assemblers, ABySS, CABOG, MaSuRCA, MIRA, SGA, SOAPdenovo, SPAdes 2.5, Velvet, used in the data, and the assembly results were downloaded from [http://bioinf.spbau.ru/en/content/spades-25-gage-b-data-sets SPAdes 2.5]
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: [http://bioinf.spbau.ru/en/quast/ QUAST] (QUAST v2.1) |
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: [http://bioinf.spbau.ru/en/quast/ QUAST] (QUAST v2.1) |
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*'''Score with Mauve Assembly Metrics, N50, Blast and GAGE:'''
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*'''Score with QUAST:'''
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| align="center" style="background:#f0f0f0;"|'''Name'''
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| align="center" style="background:#f0f0f0;"|'''Basic statisitcs'''
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| align="center" style="background:#f0f0f0;"|'''NumContigs'''
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| align="center" style="background:#f0f0f0;"|'''ABySS'''
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| align="center" style="background:#f0f0f0;"|'''NumAssemblyBases'''
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| align="center" style="background:#f0f0f0;"|'''CABOD'''
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| align="center" style="background:#f0f0f0;"|'''DCJ_Distance'''
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| align="center" style="background:#f0f0f0;"|'''MaSuRCA'''
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| align="center" style="background:#f0f0f0;"|'''NumMisCalled'''
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| align="center" style="background:#f0f0f0;"|'''SGA'''
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| align="center" style="background:#f0f0f0;"|'''NumUnCalled'''
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| align="center" style="background:#f0f0f0;"|'''SOAPdenovo'''
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| align="center" style="background:#f0f0f0;"|'''NumGapsRef'''
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| align="center" style="background:#f0f0f0;"|'''SPAdes '''
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| align="center" style="background:#f0f0f0;"|'''NumGapsAssembly''' |
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| align="center" style="background:#f0f0f0;"|'''NumGapsAssembly''' |
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| align="center" style="background:#f0f0f0;"|'''TotalBasesMissed''' |
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| align="center" style="background:#f0f0f0;"|'''TotalBasesMissed''' |