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== Sequence assembly == |
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== Sequence assembly == |
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There are eight assemblers, ABySS, CABOG, MaSuRCA, MIRA, SGA, SOAPdenovo, SPAdes 2.5, Velvet, used in the data, and the assembly results were downloaded from [http://bioinf.spbau.ru/en/content/spades-25-gage-b-data-sets SPAdes 2.5]
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There are eight assemblers, ABySS, CABOG, MaSuRCA, MIRA, SGA, SOAPdenovo, SPAdes 2.5, Velvet, used in the data, and the scaffolding results were downloaded from [http://bioinf.spbau.ru/sites/default/files/B.cereus_scf.zip SPAdes 2.5]
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== Contig integrator == |
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== Contig integrator == |
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| align="center" style="background:#f0f0f0;"|'''SGA''' |
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| align="center" style="background:#f0f0f0;"|'''SGA''' |
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| align="center" style="background:#f0f0f0;"|'''SOAPdenovo''' |
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| align="center" style="background:#f0f0f0;"|'''SOAPdenovo''' |
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| align="center" style="background:#f0f0f0;"|'''SPAdes '''
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| align="center" style="background:#f0f0f0;"|'''SPAdes 2.5'''
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| align="center" style="background:#f0f0f0;"|'''NumGapsAssembly'''
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| align="center" style="background:#f0f0f0;"|'''Velvet'''
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| align="center" style="background:#f0f0f0;"|'''TotalBasesMissed'''
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| align="center" style="background:#f0f0f0;"|'''CISA'''
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| align="center" style="background:#f0f0f0;"|'''%Missed'''
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| align="center" style="background:#f0f0f0;"|'''ExtraBases'''
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| align="center" style="background:#f0f0f0;"|'''%Extra'''
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| align="center" style="background:#f0f0f0;"|'''BrokenCDS'''
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| align="center" style="background:#f0f0f0;"|'''IntactCDS'''
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| align="center" style="background:#f0f0f0;"|'''ContigN50^'''
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| align="center" style="background:#f0f0f0;"|'''ContigN90'''
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| align="center" style="background:#f0f0f0;"|'''MaxContigLength'''
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| align="center" style="background:#eee685;"|'''N50^'''
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| align="center" style="background:#eee685;"|'''Blast_IntactCDS'''
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| align="center" style="background:#f0f0f0;"|'''Units(>200)'''
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| align="center" style="background:#f0f0f0;"|'''N50^'''
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| align="center" style="background:#f0f0f0;"|'''cor.Units'''
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| align="center" style="background:#f0f0f0;"|'''cor.N50^'''
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| align="center" style="background:#f0f0f0;"|'''Errors,(Indel>=5,Inv,Rel)'''
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| Abyss||659||2854631||590||132||6||436||499||70014||2.4117||7077||0.2479||207||2486||9223||2512||35459||9229||2305||548||9154||554||9115||7,(2,0,5)
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| # contigs||74||33||61||341||56||53||78||32
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| Edena||3287||2557545||3143||224||1||2957||3033||390614||13.4552||15975||0.6246||784||1909||1256||359||8680||1256||1053||2679||1073||2680||1072||4,(1,0,3)
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| Largest contig||430487||1198056||1197734||106317||1194879||1202947||896381||1205706
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| SOAPdenovo||674||2872327||522||85||1||482||437||71040||2.4471||10463||0.3643||154||2539||9626||3069||47607||9762||2361||509||9626||511||9626||3,(2,0,1)
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| Total length||5380708||5420940||5433046||5321914||5344353||5379795||5356258||5469099
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| Velvet||502||2858949||432||153||12||377||386||69466||2.3928||7682||0.2687||137||2556||12962||3811||54726||13005||2421||405||12685||422||12217||19,(10,4,5)
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| Velvet||502||2858949||432||153||12||377||386||69466
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|-bgcolor="#66CCFF" |
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|-bgcolor="#66CCFF" |
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| CISA||347||2866024||330||266||15||316||278||60323||2.0779||11406||0.398||121||2572||14992||4664||54747||15327||2482||322||14916||343||14743||20,(6,5,9) |
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| CISA||347||2866024||330||266||15||316||278||60323||2.0779||11406||0.398||121||2572||14992||4664||54747||15327||2482||322||14916||343||14743||20,(6,5,9) |
