(→A schematic overview of CISA)
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(→A schematic overview of CISA)
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[[Image:Overview.jpg|left|]] | [[Image:Overview.jpg|left|]] | ||
- | <br>Basically CISA consists of four major phases: (1) to identify representative contigs and possible extension (2) to remove and split the contigs which may be misassembled and to clip the uncertain regions that are located in the end of contigs, (3) to iteratively merge contigs with a minimum 30% overlap and to estimate the maximal size of repetitive regions, and (4) to merge contigs based on the size of repetitive regions. | + | <br>Basically CISA consists of four major phases: |
+ | # Numbered list item | ||
+ | (1) to identify representative contigs and possible extension (2) to remove and split the contigs which may be misassembled and to clip the uncertain regions that are located in the end of contigs, (3) to iteratively merge contigs with a minimum 30% overlap and to estimate the maximal size of repetitive regions, and (4) to merge contigs based on the size of repetitive regions. |