Version Differences for CISA
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(→A schematic overview of CISA)
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(→A schematic overview of CISA)
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| [[Image:Overview.jpg|left|]] | [[Image:Overview.jpg|left|]] | ||
| - | <br><font size=4>CISA basically consists of four major phases: | + | <br><font size=4>CISA basically consists of four major phases:</font> |
| - | # (1) to identify representative contigs and possible extension | + | # <font size=4>(1) to identify representative contigs and possible extension</font> |
| # (2) to remove and split the contigs which may be misassembled and to clip the uncertain regions that are located in the end of contigs | # (2) to remove and split the contigs which may be misassembled and to clip the uncertain regions that are located in the end of contigs | ||
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| # (3) to iteratively merge contigs with a minimum 30% overlap and to estimate the maximal size of repetitive regions | # (3) to iteratively merge contigs with a minimum 30% overlap and to estimate the maximal size of repetitive regions | ||
| - | # (4) to merge contigs based on the size of repetitive regions.</font> | + | # (4) to merge contigs based on the size of repetitive regions. |