Version Differences for CISA
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(→A schematic overview of CISA)
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(→A schematic overview of CISA)
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| Line 11: | |||
| <br>CISA basically consists of four major phases: | <br>CISA basically consists of four major phases: | ||
| - | # <font size=4>(1) to identify representative contigs and possible extension</font> | + | # (1) to identify representative contigs and possible extension |
| - | # <font size=4>(2) to remove and split the contigs which may be misassembled and to clip the uncertain regions that are located in the end of contigs</font> | + | # (2) to remove and split the contigs which may be misassembled and to clip the uncertain regions that are located in the end of contigs |
| - | # <font size=4>(3) to iteratively merge contigs with a minimum 30% overlap and to estimate the maximal size of repetitive regions</font> | + | # (3) to iteratively merge contigs with a minimum 30% overlap and to estimate the maximal size of repetitive regions |
| - | # <font size=4>(4) to merge contigs based on the size of repetitive regions.</font> | + | # (4) to merge contigs based on the size of repetitive regions. |