Version Differences for Description
| Line 14: | |||
| * The processed contigs named '''R1_contigs.fa''' is placed outside the CISA1 folder. | * The processed contigs named '''R1_contigs.fa''' is placed outside the CISA1 folder. | ||
| + | In the phase 2 (CISA2): | ||
| + | * The uncertain regions located in the end of contigs were clipped ('''clip_info''') | ||
| + | * The clipped out sequences are recorded in the file of '''clip_out''' | ||
| + | * The unalignable gaps are recorded in the file of '''Gaps''', and the gaps of larger than 95th quantile (R2 are clipped. | ||