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* Similar to CISA3, several rounds of blastn are performed in order to merge contigs with overlap larger than the maximum size of the repetitive regions. |
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* Similar to CISA3, several rounds of blastn are performed in order to merge contigs with overlap larger than the maximum size of the repetitive regions. |
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* In each round, information about contig extensions and the processed contigs are recorded in the files of '''Extend_info''' and '''temp.fa''', respectively.
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* The finally processed contigs named '''CISA.fa''' (as you defined in the CISA.config, outfile=CISA.fa) is placed outside the CISA4 folder. |
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* The finally processed contigs named '''CISA.fa''' (as you defined in the CISA.config, outfile=CISA.fa) is placed outside the CISA4 folder. |
