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= In the phase 2 (CISA2): = |
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= In the phase 2 (CISA2): = |
| - |
* The uncertain regions located in the end of contigs were clipped ('''clip_info''')
|
+ |
* The uncertain regions located in the end of contigs were clipped ('''clip_info''').
|
| - |
* The clipped out sequences are recorded in the file of '''clip_out'''
|
+ |
* The clipped out sequences are recorded in the file of '''clip_out'''.
|
| |
* The unalignable gaps are recorded in the file of '''Gaps''', and the size of gaps larger than 95th quantile (R2_gap=0.95) are clipped. |
|
* The unalignable gaps are recorded in the file of '''Gaps''', and the size of gaps larger than 95th quantile (R2_gap=0.95) are clipped. |
