Version Differences for Description

(In the phase 2 (CISA2):)
(In the phase 2 (CISA2):)
Line 22:
  * The clipped out sequences are recorded in the file of '''clip_out'''.    * The clipped out sequences are recorded in the file of '''clip_out'''. 
       
- * The unalignable gaps are recorded in the file of '''Gaps''', and the size of gaps larger than 95th quantile (R2_gap=0.95) are clipped.   + * The unalignable gaps are recorded in the file of '''Gaps''', after sorting in an ascending order, contigs with the size of gaps larger than 95th quantile (R2_gap=0.95) are clipped.  
       
  * The misassembled contigs recorded in the file of '''Remove_Info''' are removed and extra contigs are introduced if necessary.    * The misassembled contigs recorded in the file of '''Remove_Info''' are removed and extra contigs are introduced if necessary.