(→In the phase 2 (CISA2):)
|
(→In the phase 2 (CISA2):)
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Line 22: | |||
* The clipped out sequences are recorded in the file of '''clip_out'''. | * The clipped out sequences are recorded in the file of '''clip_out'''. | ||
- | * The unalignable gaps are recorded in the file of '''Gaps''', after sorting in an ascending order, contigs with the size of gaps larger than 95th quantile (R2_gap=0.95) are clipped. | + | * The unalignable gaps are recorded in the file of '''Gaps''', after sorting in ascending order, contigs with the size of gaps larger than 95th quantile (R2_gap=0.95) are clipped. |
* The misassembled contigs recorded in the file of '''Remove_Info''' are removed and extra contigs are introduced if necessary. | * The misassembled contigs recorded in the file of '''Remove_Info''' are removed and extra contigs are introduced if necessary. |