Version Differences for Description

Line 21:
  * The clipped out sequences are recorded in the file of '''clip_out'''    * The clipped out sequences are recorded in the file of '''clip_out''' 
       
- * The unalignable gaps are recorded in the file of '''Gaps''', and the gaps of larger than 95th quantile (R2 are clipped.   + * The unalignable gaps are recorded in the file of '''Gaps''', and the gaps of larger than 95th quantile (R2_gap=0.95) are clipped.