Version Differences for Description

Line 3:
  Four folders are generated after running CISA.    Four folders are generated after running CISA. 
       
- In the phase 1 (CISA1):      
    + = In the phase 1 (CISA1): =  
       
       
  * The representative contigs and their explained contigs are recorded in the file of '''Explained.txt'''.    * The representative contigs and their explained contigs are recorded in the file of '''Explained.txt'''. 
Line 15:
  * The processed contigs named '''R1_contigs.fa''' is placed outside the CISA1 folder.    * The processed contigs named '''R1_contigs.fa''' is placed outside the CISA1 folder. 
       
- In the phase 2 (CISA2):      
    + = In the phase 2 (CISA2): =  
       
       
  * The uncertain regions located in the end of contigs were clipped ('''clip_info''')    * The uncertain regions located in the end of contigs were clipped ('''clip_info''')