Version Differences for E. coli
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(→Evaluation)
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(→Evaluation)
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| *'''Scaffolding the contigs using SSPACE''' | *'''Scaffolding the contigs using SSPACE''' | ||
| : We used [http://www.ncbi.nlm.nih.gov/pubmed/21149342 SSPACE] to scaffold the contigs and quantified the scaffolds by Mauve assembly metrics. | : We used [http://www.ncbi.nlm.nih.gov/pubmed/21149342 SSPACE] to scaffold the contigs and quantified the scaffolds by Mauve assembly metrics. | ||
| + | {| {{table}} | ||
| + | | align="center" style="background:#f0f0f0;"|'''Name''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''NumContigs''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''NumAssemblyBases''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''NumMisCalled''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''NumUnCalled''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''NumGapsRef''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''NumGapsAssembly''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''TotalBasesMissed''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''PercBasesMissed''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''ExtraBases''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''PercExtraBases''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''BrokenCDS''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''IntactCDS''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''ContigN50''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''MaxContigLength''' | ||
| + | |- | ||
| + | | CISA+SSPACE||69||4625880||362||157||93||98||52261||1.1264||34643||0.7489||43||4277||126254||316040 | ||
| + | |- | ||
| + | | Abyss+SSPACE||101||4627104||393||735||114||119||54956||1.1845||33747||0.7293||57||4263||107040||268750 | ||
| + | |- | ||
| + | | minimus2+SSPACE||64||4608774||337||54||93||76||75502||1.6273||36021||0.7816||49||4271||150458||420117 | ||
| + | |- | ||
| + | | | ||
| + | |} | ||