Version Differences for E. coli
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(→Sequence assembly)
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(→Sequence assembly)
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| Line 23: | |||
| Merged File: [[Media:Set1 Contigs.fa|Set1_Contig]] | Merged File: [[Media:Set1 Contigs.fa|Set1_Contig]] | ||
| - | The above assemblers together with the parameter setting have been selected for de novo assembling of E. coli. | + | The above assemblers together with the parameter setting have been selected for ''de novo'' assembling of ''E. coli''. |
| + | After assembly, we discarded contigs with less than 100bp and evaluated the accuracy of the assemblies based on the Mauve Assembly Matrices (the results are shown below. | ||
| - | After assembly, we discarded contigs with less than 100bp and evaluated the accuracy of assemblies based on the Mauve | ||
| * '''Set2''' (Different parameters for Abyss - the assembler provides the lowest number of contigs in Set1) | * '''Set2''' (Different parameters for Abyss - the assembler provides the lowest number of contigs in Set1) | ||