Version Differences for E. coli
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(→Sequence assembly)
|
(→Sequence assembly)
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| Line 22: | |||
| </table> | </table> | ||
| Merged File: [[Media:Set1 Contigs.fa|Set1_Contig]] | Merged File: [[Media:Set1 Contigs.fa|Set1_Contig]] | ||
| - | <pre> | + | <blackblock> |
| The above assemblers together with the parameter setting have been selected for ''de novo'' assembling of ''E. coli''. | The above assemblers together with the parameter setting have been selected for ''de novo'' assembling of ''E. coli''. | ||
| Line 30: | |||
| Because even the same assemble performs differently over varying parameter settings such as kmer, we have tried different parameter settings for Abyss and SOAPdenovo in the following sets. | Because even the same assemble performs differently over varying parameter settings such as kmer, we have tried different parameter settings for Abyss and SOAPdenovo in the following sets. | ||
| - | </pre> | + | </blackblock> |
| * '''Set2''' (Different parameters for Abyss - the assembler provides the lowest number of contigs in Set1) | * '''Set2''' (Different parameters for Abyss - the assembler provides the lowest number of contigs in Set1) | ||