Version Differences for E. coli
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(→Contig integrator)
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(→Contig integrator)
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| Line 100: | |||
| </table> | </table> | ||
| Since minimus2 can only merge two sequence sets at a time, we used minimus2 to integrate the set1 in alphabetical order (i.e., ACESV) and in descending order of contig number (i.e., SCEVA). | Since minimus2 can only merge two sequence sets at a time, we used minimus2 to integrate the set1 in alphabetical order (i.e., ACESV) and in descending order of contig number (i.e., SCEVA). | ||
| + | *'''GAA''' | ||
| + | After formatting the contig names in the format of >Contig1.1, we conducting GAA by using | ||
| + | perl gaa.pl -t ../Abyss_contigs_1.fa -q ../CLC_1.fa -o AC | ||
| == Evaluation == | == Evaluation == | ||