Version Differences for E. coli
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(→Contig integrator)
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(→Contig integrator)
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| Line 103: | |||
| *'''GAA''' | *'''GAA''' | ||
| - | After formatting the contig names in the format of >Contig1.1, we conducting GAA by using | + | After formatting the contig names in the format of >Contig1.1, we conducting GAA by using the following script. |
| perl gaa.pl -t ../Abyss_contigs_1.fa -q ../CLC_1.fa -o AC | perl gaa.pl -t ../Abyss_contigs_1.fa -q ../CLC_1.fa -o AC | ||
| + | Similarly, we can iteratively integrate the output assembly with another assembly to get the contigs (A+C+E+S+V). | ||
| == Evaluation == | == Evaluation == | ||