Version Differences for E. coli
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(→Contig integrator)
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(→Contig integrator)
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| Line 103: | |||
| *'''GAA''' | *'''GAA''' | ||
| - | After formatting the contig names in the format of >Contig1.1, we conducted GAA to integrate the assembly of Abyss with the assembly of Edena by using the following script and got the contigs. | + | After formatting the contig names in the format of >Contig1.1, we conducted GAA to integrate the assembly of Abyss with the assembly of Edena by using the following script and got the set of contigs [[Media: gaa2.fa|gaa.fa]]. |
| perl gaa.pl -t ../Abyss_contigs_1.fa -q ../CLC_1.fa -o AC | perl gaa.pl -t ../Abyss_contigs_1.fa -q ../CLC_1.fa -o AC | ||
| - | Similarly, we can iteratively integrate the output assembly with another assembly to get the contigs (A+C+E+S+V). | + | Similarly, we can iteratively integrate the output assembly with another assembly to get the set of contigs (A+C+E+S+V). [[Media:gaa5.fa|gaa5.fa]] |
| == Evaluation == | == Evaluation == | ||