Version Differences for E. coli
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(→Contig integrator)
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(→Contig integrator)
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| Line 88: | |||
| Abyss ./Abyss_contigs.fa 3 | Abyss ./Abyss_contigs.fa 3 | ||
| - | A file named [[Media:maia_assembly.fa|maia_assembly.fa]] is generated, containing a draft genome of 4640055 bp with 126761 uncalled bases (Ns). We split the genome into contigs (at >10Ns) and got the set of contigs [[Media: maia.fa|maia.fa]]. | + | A file named [[Media:maia_assembly.fa|maia_assembly.fa]] was generated, containing a draft genome of 4640055 bp with 126761 uncalled bases (Ns). We split the genome into contigs (at >10Ns) and got the set of contigs [[Media: maia.fa|maia.fa]]. |
| * '''minimus2''' | * '''minimus2''' | ||
| Line 103: | |||
| *'''GAA''' | *'''GAA''' | ||
| - | After formatting the contig names in the format of >Contig1.1, we conducted GAA to integrate the assembly of Abyss with the assembly of Edena by using the following script and got the set of contigs [[Media: gaa2.fa|gaa.fa]]. | + | After formatting the contig names in the format of >Contig1.1, we conducted GAA to integrate the assembly of Abyss with the assembly of Edena by using the following script and got the set of contigs [[Media: gaa2.fa|gaa2.fa]]. |
| perl gaa.pl -t ../Abyss_contigs_1.fa -q ../CLC_1.fa -o AC | perl gaa.pl -t ../Abyss_contigs_1.fa -q ../CLC_1.fa -o AC | ||