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: [[Media:NC 000913.gbk|Eshcherichia coli K12 MG1655]] |
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: [[Media:NC 000913.gbk|Eshcherichia coli K12 MG1655]] |
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* '''Evaluated by Mauve Assembly Metrics to calculate the values for the left columns of "Blast_IntactCDS"'''
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* '''Evaluated by Mauve Assembly Metrics to calculate the values for the left columns of "N50, Blast_IntactCDS"'''
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: [http://code.google.com/p/ngopt/wiki/How_To_Score_Genome_Assemblies_with_Mauve How to score genome assemblies using the Mauve system]
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: [http://code.google.com/p/ngopt/wiki/How_To_Score_Genome_Assemblies_with_Mauve How to score genome assemblies using the Mauve system] (mauve_linux_snapshot_2011-08-31)
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* '''Evaluated by Blast with Features''' |
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* '''Evaluated by Blast with Features''' |
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: [http://gage.cbcb.umd.edu/index.html Gage] |
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: [http://gage.cbcb.umd.edu/index.html Gage] |
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*'''Score with Mauve metrics:'''
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*'''Score with Mauve Assembly Metrics, N50, Blast and GAGE:'''
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'''''Set1'''''
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{| {{table}} border="1" |
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{| {{table}} border="1" |
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| align="center" style="background:#f0f0f0;"|'''Name''' |
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| align="center" style="background:#f0f0f0;"|'''Name''' |
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| align="center" style="background:#f0f0f0;"|'''BrokenCDS''' |
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| align="center" style="background:#f0f0f0;"|'''BrokenCDS''' |
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| align="center" style="background:#f0f0f0;"|'''IntactCDS''' |
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| align="center" style="background:#f0f0f0;"|'''IntactCDS''' |
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| align="center" style="background:#f0f0f0;"|'''ContigN50'''
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| align="center" style="background:#f0f0f0;"|'''ContigN50^'''
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| align="center" style="background:#f0f0f0;"|'''ContigN90''' |
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| align="center" style="background:#f0f0f0;"|'''ContigN90''' |
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| align="center" style="background:#f0f0f0;"|'''MaxContigLength''' |
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| align="center" style="background:#f0f0f0;"|'''MaxContigLength''' |
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| align="center" style="background:#f0f0f0;"|'''!N50'''
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| align="center" style="background:#eee685;"|'''N50^'''
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| align="center" style="background:#eee685;"|'''Blast_IntactCDS''' |
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| align="center" style="background:#eee685;"|'''Blast_IntactCDS''' |
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| align="center" style="background:#f0f0f0;"|'''Units(>200)''' |
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| align="center" style="background:#f0f0f0;"|'''Units(>200)''' |
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| align="center" style="background:#f0f0f0;"|'''N50'''
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| align="center" style="background:#f0f0f0;"|'''N50^'''
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| align="center" style="background:#f0f0f0;"|'''cor.Units''' |
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| align="center" style="background:#f0f0f0;"|'''cor.Units''' |
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| align="center" style="background:#f0f0f0;"|'''cor.N50'''
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| align="center" style="background:#f0f0f0;"|'''cor.N50^'''
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| align="center" style="background:#f0f0f0;"|'''Errors,(Indel>=5,Inv,Rel)''' |
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| align="center" style="background:#f0f0f0;"|'''Errors,(Indel>=5,Inv,Rel)''' |
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