Version Differences for H. volc
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(→Sequence assembly)
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(→Sequence assembly)
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| Line 15: | |||
| <tr><td>[[Media:assembly3.fasta|volcIDBA]]</td><td>It was sequenced with 80x coverage 76 nt read pairs with 300 nt inserts on an Illumina GAIIx instrument at UC Davis Genome Center, and 2x coverage of 50 nt mate-pairs with 6.5 kbp insert sequences at BGI. The reads were error corrected with REPTILE using default parameters, contigs assembled with IDBA using the custome parameters --mink 33 --maxk 78 and evertything else default, and scaffolded with SSPACE using the custom parameter -a 0.5 and everything else default.</td><td>[[Media:n_assembly3.fasta|assembly3.fasta]]</td></tr> | <tr><td>[[Media:assembly3.fasta|volcIDBA]]</td><td>It was sequenced with 80x coverage 76 nt read pairs with 300 nt inserts on an Illumina GAIIx instrument at UC Davis Genome Center, and 2x coverage of 50 nt mate-pairs with 6.5 kbp insert sequences at BGI. The reads were error corrected with REPTILE using default parameters, contigs assembled with IDBA using the custome parameters --mink 33 --maxk 78 and evertything else default, and scaffolded with SSPACE using the custom parameter -a 0.5 and everything else default.</td><td>[[Media:n_assembly3.fasta|assembly3.fasta]]</td></tr> | ||
| </table> | </table> | ||
| - | <sup>§The files only contain the contigs, where scaffolds were split whenever >10 Ns occurs.</sup> | + | §The files only contain the contigs, where scaffolds were split whenever >10 Ns occurs. |
| Merged File: [[Media:Mauve_Contigs.fa|Mauve_Contigs.fa]] | Merged File: [[Media:Mauve_Contigs.fa|Mauve_Contigs.fa]] | ||