Version Differences for Manual2
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(→Commands and configuration)
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(→Commands and configuration)
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| Line 50: | |||
| The content of <font color=red>myconfig</font> file | The content of <font color=red>myconfig</font> file | ||
| - | genome=genome size | + | genome=genome size <font color=blue> The genome size of each genome contain in genome_size.txt file. The largest genome size will be recommended to put here.</font> |
| infile=Contigs.fa | infile=Contigs.fa | ||
| - | nucmer=path/nucmer | + | nucmer=path/nucmer <font color=blue> Please modify the "path" into the 安裝路徑.</font> |
| - | R2_Gap=0.9 (default:0.9) | + | R2_Gap=0.9 <font color=blue>default:0.9</font> <font color=red>myconfig file中也改成0.9</font> |
| - | CISA=path/CISA1.0 | + | CISA=path/CISA1.0 <font color=blue> Please modify the "path" into the 安裝路徑.</font> |
| - | makeblastdb=path/makeblastdb | + | makeblastdb=path/makeblastdb <font color=blue> Please modify the "path" into the 安裝路徑.</font> |
| - | blastn=path/blastn | + | blastn=path/blastn <font color=blue> Please modify the "path" into the 安裝路徑.</font> |
| genome | genome | ||