Version Differences for Manual2
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(→Example)
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(→Example)
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| Line 88: | |||
| The content of the configuration file:<br> | The content of the configuration file:<br> | ||
| - | ''count=5<br> | + | count=5<br> |
| data=Abyss_contigs.fa,title=Abyss <font color=red>設定hyperlink到example file,方便直接下載</font><br> | data=Abyss_contigs.fa,title=Abyss <font color=red>設定hyperlink到example file,方便直接下載</font><br> | ||
| data=Edena_contigs.fa,title=Edena<br> | data=Edena_contigs.fa,title=Edena<br> | ||
| Line 94: | |||
| data=CLC_contigs.fa,title=CLC<br> | data=CLC_contigs.fa,title=CLC<br> | ||
| data=Velvet_contigs.fa,title=Velvet<br> | data=Velvet_contigs.fa,title=Velvet<br> | ||
| - | Master_file=Contigs.fa<br>'' | + | Master_file=Contigs.fa<br> |
| - | Command:<br> | + | *'''Command:'''<br> |
| ./Merge.py <font color=red>myconfig</font> | ./Merge.py <font color=red>myconfig</font> | ||
| *'''Start to integrate:'''<br> | *'''Start to integrate:'''<br> | ||
| The content of the configuration file:<br> | The content of the configuration file:<br> | ||
| - | ''genome=4626205<br> | + | genome=4626205<br> |
| - | infile=Contigs.fa<br> | + | infile=Contigs.fa<br> |
| - | nucmer=path/nucmer<br> | + | nucmer=path/nucmer<br> |
| - | R2_Gap=0.95<br> | + | R2_Gap=0.95<br> |
| - | CISA=path/CISA1.0<br> | + | CISA=path/CISA1.0<br> |
| - | makeblastdb=path/makeblastdb<br> | + | makeblastdb=path/makeblastdb<br> |
| - | blastn=path/blastn<br>'' | + | blastn=path/blastn<br>'' |
| - | 4626205 which is the longest whole genome between different result from 5 assemblers is set into genome variable. | ||
| - | Command:<br> | + | *4626205 which is the longest whole genome between different result from 5 assemblers is set into genome variable. <br> |
| + | *'''Command:'''<br> | ||
| ./CISA.py <font color=red>myconfig</font> | ./CISA.py <font color=red>myconfig</font> | ||