Version Differences for Manual2

(→Merge Contigs)

(→Start to integrate)

 ===Start to integrate===
 The content of the configuration file:<br>
-								 genome=4626205<br>
+								<pre>
-								 infile=Contigs.fa<br>
+								 genome=4626205
-								 nucmer=path/nucmer<br>
+								 infile=Contigs.fa
-								 R2_Gap=0.95<br>
+								 nucmer=path/nucmer
-								 CISA=path/CISA1.0<br>
+								 R2_Gap=0.9
-								 makeblastdb=path/makeblastdb<br>
+								 CISA=path/CISA1.0
-								 blastn=path/blastn<br>''
+								 makeblastdb=path/makeblastdb
 								 blastn=path/blastn
 								</pre>
 *4626205 which is the longest whole genome between different result from 5 assemblers is set into genome variable. <br>
 <p>
-								*'''Command:'''<br>
+								*Command:
-								./CISA.py <font color=red>myconfig</font><br>
+								python CISA.py CISA.config
 = Test-mammer =