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''Bacillus cereus'' strain ATCC_10987. The ''B. cereus'' ATCC_10987 consists of a circular chromosome of 5,224,283 bp and one plasmid of 208,369 bp in length, respectively.
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== Read source ==
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: The paired-end illuminia read data of ''B. cereus'' were downloaded from [http://ccb.jhu.edu/gage_b/datasets/index.html Gage-B]
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== Sequence assembly ==
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There are eight assemblers, ABySS, CABOG, MaSuRCA, MIRA, SGA, SOAPdenovo, SPAdes 2.5 and Velvet, used in the data, and the scaffolding results were downloaded from [http://bioinf.spbau.ru/sites/default/files/B.cereus_scf.zip SPAdes website]
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== Contig integrator ==
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[[Media:B.cereus_all_ctg.gz| Contigs]]<br>
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== Evaluation ==
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* '''Benchmark genome'''
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: [ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Bacillus_cereus_ATCC_10987_uid57673/ B. cereus ATCC_10987]
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* '''Evaluated by QUAST'''
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: [http://bioinf.spbau.ru/en/quast/ QUAST] (QUAST v2.1)
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: Running QUAST needs [[Media:NC_003909.ncbi.gz|gene]] and [[Media:NC_003909.fna.gz|sequence]] information.
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*'''Score with QUAST:''' [http://sb.nhri.org.tw/Quast/B_cereus/report.html more detail]
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{| {{table}} border="１"
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| align="left" style="background:#f0f0f0;"|'''Basic statisitcs'''
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| align="left" style="background:#f0f0f0;"|'''ABySS'''
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| align="left" style="background:#f0f0f0;"|'''CABOD'''
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| align="left" style="background:#f0f0f0;"|'''MaSuRCA'''
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| align="left" style="background:#f0f0f0;"|'''SGA'''
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| align="left" style="background:#f0f0f0;"|'''SOAPdenovo'''
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| align="left" style="background:#f0f0f0;"|'''SPAdes 2.5'''
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| align="left" style="background:#f0f0f0;"|'''Velvet'''
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| align="left" style="background:#66CCFF;"|'''CISA'''
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|-
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| # contigs||74||33||61||341||56||53||78||'''''32'''''
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|-
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| Largest contig||430487||1198056||1197734||106317||1194879||1202947||896381||'''''1205706'''''
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|-
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| Total length||5380708||5420940||5433046||5321914||5344353||5379795||5356258||'''''5469099'''''
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|-
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| NG50||135613||431479||337861||25512||456635||485493||247748||'''''487570'''''
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|-
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| align="left" style="background:#f0f0f0;"|'''Misassemblies'''
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|-
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| # misassemblies||4||15||15||3||1||3||9||'''''11'''''
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|-
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|Misassembled contigs length ||155883 ||1987058 ||765654 ||24763 ||90965 ||94799 ||723259 ||'''''2399227'''''
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|-
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| align="left" style="background:#f0f0f0;"|'''Genome statistics'''
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|-
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| Genome fraction (%)||98.444||99.334||99.009||97.438||98.099||98.554||97523||'''''99.38'''''
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|-
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| # genes||5819 + 64 part ||5965 + 34 part ||5964 + 34 part ||5635 + 231 part ||5839 + 44 part ||5950 + 27 part ||5604 + 275 part ||'''''5980 + 28 part '''''
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| # mismatches per 100 kbp || 6.62 ||4.43 ||8.96|| 0.7 || 8.16 || 2.07 || 5.93 ||'''''6.08''''
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| # indels per 100 kbp ||7.57 ||5.86 ||5.95 ||2 ||5.69 ||2.39 ||30.28 ||'''''2.78'''''
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|-
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| # N's per 100kbp || 116.43 || 17.43 || 7.49 || 0 || 8.51 || 15.24 || 783.91 ||''''' 0.04'''''
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|}
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