Version Differences for S. aureu 101 bp
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| The split references for MAIA and the integrated results can be downloaded [[Media:maia_staphy_100.zip|maia_staphy_100]]. | The split references for MAIA and the integrated results can be downloaded [[Media:maia_staphy_100.zip|maia_staphy_100]]. | ||
| == Evaluation == | == Evaluation == | ||
| - | {| {{table}} | ||
| - | | align="center" style="background:#f0f0f0;"|'''''' | ||
| - | | align="center" style="background:#f0f0f0;"|'''Mauve assembly metrics''' | ||
| - | | align="center" style="background:#f0f0f0;"|'''''' | ||
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| - | | align="center" style="background:#f0f0f0;"|'''''' | ||
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| - | | align="center" style="background:#f0f0f0;"|'''''' | ||
| - | | align="center" style="background:#f0f0f0;"|'''''' | ||
| - | | align="center" style="background:#f0f0f0;"|'''''' | ||
| - | | align="center" style="background:#f0f0f0;"|'''''' | ||
| - | | align="center" style="background:#f0f0f0;"|'''''' | ||
| - | | align="center" style="background:#f0f0f0;"|'''''' | ||
| - | | align="center" style="background:#f0f0f0;"|'''''' | ||
| - | | align="center" style="background:#f0f0f0;"|'''''' | ||
| - | | align="center" style="background:#f0f0f0;"|'''''' | ||
| - | | align="center" style="background:#f0f0f0;"|'''''' | ||
| - | | align="center" style="background:#f0f0f0;"|'''''' | ||
| - | | align="center" style="background:#f0f0f0;"|'''in this study''' | ||
| - | | align="center" style="background:#f0f0f0;"|'''GAGE''' | ||
| - | | align="center" style="background:#f0f0f0;"|'''''' | ||
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| - | | align="center" style="background:#f0f0f0;"|'''''' | ||
| - | | align="center" style="background:#f0f0f0;"|'''''' | ||
| - | |- | ||
| - | | Name||NumContigs||NumAssemblyBases||DCJ_Distance||NumMisCalled||NumUnCalled||NumGapsRef||NumGapsAssembly||TotalBasesMissed||%Missed||ExtraBases||%Extra||BrokenCDS||IntactCDS||ContigN50||ContigN90||MaxContigLength||Blast_IntactCDS||Units(>200)||N50||cor.Units||cor.N50||Errors,(Indel>=5,Inv,Rel) | ||
| - | |- | ||
| - | | Abyss||133||4626205||107||334||69||123||119||57847||1.2468||29424||0.636||57||4263||96157||26096||222425||4249||108||96511||116||92933||8,(6,0,2) | ||
| - | |- | ||
| - | | CLC||379||4546926||304||100||0||288||287||130550||2.8138||3405||0.0749||62||4258||29767||8447||107342||4228||288||28450||290||28036||2,(0,1,1) | ||
| - | |- | ||
| - | | Edena||211||4569446||154||17||0||129||125||86780||1.8704||2078||0.0455||66||4254||54405||13642||186686||4191||182||54405||186||52796||4,(2,1,1) | ||
| - | |- | ||
| - | | SOAPdenovo||553||4547211||475||36||0||461||412||124407||2.6814||6972||0.1533||100||4220||17902||5384||103369||4131||450||17892||451||17892||1,(0,0,1) | ||
| - | |- | ||
| - | | Velvet||283||4550675||207||138||0||208||203||116542||2.5119||2783||0.0612||74||4246||52474||12537||166094||4194||217||52474||224||49022||8,(5,0,3) | ||
| - | |- | ||
| - | | CISA_Set1||72||4627549||70||241||50||91||92||49487||1.0666||32028||0.6921||44||4276||119107||32288||312018||4276||72||126254||83||113511||11,(8,0,3) | ||
| - | |- | ||
| - | | GAA#||314||4578451||245||148||7||240||227||97081||2.0924||10516||0.2284||72||4248||49430||13068||157184||4205||249||50305||251||48138||4,(2,0,2) | ||
| - | |- | ||
| - | | GAA*||311||4602917||224||156||3||225||216||93476||2.0147||11942||0.2591||76||4244||49990||12208||163308||4208||245||51075||238||47954||5,(3,0,2) | ||
| - | |- | ||
| - | | MAIA||110||4513348||96||82||54||100||95||129936||2.8005||1090||0.0242||48||4272||112717||30950||312145||4212||95||126075||97||107674||5,(2,0,3) | ||
| - | |- | ||
| - | | minimus2#||155||4598769||133||206||0||143||138||90163||1.9433||32604||0.7058||58||4262||82947||21666||202745||4243||137||85880||144||80493||8,(5,1,2) | ||
| - | |- | ||
| - | | minimus2*||73||4597392||67||323||0||96||80||155862||3.3593||102792||2.2503||52||4268||121942||35207||296685||4199||72||127420||83||113511||11,(7,1,3) | ||
| - | |- | ||
| - | | GAA (Abyss,Edena)||133||4637982||102||328||93||118||112||54835||1.1819||28888||0.6229||57||4263||96157||26096||222425||4258||108||96511||115||92933||8,(6,0,2) | ||
| - | |- | ||
| - | | GAA (A,C,E,S,V)||138||4639673||103||305||93||119||113||54254||1.1693||29292||0.6311||57||4263||96157||26096||222425||4258||108||96511||115||92933||8,(6,0,2) | ||
| - | |- | ||
| - | | MAIA (split3)||3||4915920||3||68||9573||89||90||213328||4.5979||464447||9.4478||55||4265||1422748||1422748||1927448||4217||-||-||-||-||- | ||
| - | |- | ||
| - | | MAIA (split3&n)||145||4800506||112||68||66||116||110||159557||3.439||124964||2.6031||50||4270||126075||30950||318482||4212||121||145106||103||107674||5,(3,0,2) | ||
| - | |- | ||
| - | | minimus2(A,C,E,S,V)||74||4608653||68||285||0||97||78||76881||1.657||35464||0.7695||50||4270||126075||34542||417704||4262||73||134584||83||113511||10,(7,1,2) | ||
| - | |- | ||
| - | | minimus2(S,C,V,E,A)||69||4215087||69||214||249||90||78||548181||11.8151||113137||2.6841||51||4269||119108||35441||312145||3855||69||115198||79||105796||10,(5,2,3) | ||
| - | |- | ||
| - | | | ||
| - | |} | ||
| * '''Benchmark genome''' | * '''Benchmark genome''' | ||