Version Differences for S. aureu 35 bp

Line 9:
  == Sequence assembly ==    == Sequence assembly == 
  <table border=1>    <table border=1> 
- <tr><td>'''''Software'''''</td><td>'''''Version'''''</td><td>'''''Parameters'''''</td><td>'''''Download'''''</td></tr>   + <tr><td>'''''Software'''''</td><td>'''''Version'''''</td><td>'''''Parameters'''''</td></tr>  
- <tr><td>ABySS</td><td>1.3.0</td><td>k=23</td><td>[[Media:S_Abyss_Contigs.fa|Abyss]]</td></tr>   + <tr><td>ABySS</td><td>1.3.0</td><td>k=23</td></tr>  
- <tr><td>Velvet</td><td>1.1.04</td><td>k=23 min_contig_lgth=100 scaffolding=no</td><td>[[Media:S_Velvet_Contigs.fa|Velvet]]</td></tr>   + <tr><td>Velvet</td><td>1.1.04</td><td>k=23 min_contig_lgth=100 scaffolding=no</td></tr>  
- <tr><td>Edena</td><td>3</td><td>m=21</td><td>[[Media:S_Edena_Contigs.fa|Edena]]</td></tr>   + <tr><td>Edena</td><td>3</td><td>m=21</td></tr>  
- <tr><td>SOAPdenovo</td><td>1.05</td><td>K=23 M=3</td><td>[[Media:S_SOAPdenovo_Contigs.fa|SOAPdenovo]]</td></tr>   + <tr><td>SOAPdenovo</td><td>1.05</td><td>K=23 M=3</td></tr>  
  </table>    </table> 
- Merged File: [[Media:S_Contigs.fa|S_Contigs]]      
       
  == Contig integrator ==    == Contig integrator == 
Line 21:
- <table border=1>   + [[Media:S.aures_35_bp_all_ctg.tar.gz|All Contigs]]<br>  
- <tr>   + Beacuase minimus2 and GAA merge two assemblies at a time, we iteratively integrate the four assemblies in random order.  
- <td>'''''Integrator'''''</td><td>'''''Download'''''</td>      
- </tr>      
- <tr><td>CISA</td><td>[[Media:CISA_S.fa|CISA]]</td></tr>      
- <tr><td>minimus2</td><td>[[Media:minimus2_S.fa|minimus2]]</td></tr>      
- </table>      
       
  == Evaluation ==    == Evaluation == 
Line 57:
  | align="center" style="background:#f0f0f0;"|'''MaxContigLength'''    | align="center" style="background:#f0f0f0;"|'''MaxContigLength''' 
  | align="center" style="background:#eee685;"|'''Blast_IntactCDS'''    | align="center" style="background:#eee685;"|'''Blast_IntactCDS''' 
    + | align="center" style="background:#f0f0f0;"|'''Units(>200)'''  
    + | align="center" style="background:#f0f0f0;"|'''N50'''  
    + | align="center" style="background:#f0f0f0;"|'''cor.Units'''  
    + | align="center" style="background:#f0f0f0;"|'''cor.N50'''  
    + | align="center" style="background:#f0f0f0;"|'''Errors,(Indel>=5,Inv,Rel)'''  
  |-    |- 
- | Velvet||1152||2775301||1124||49||0||1010||866||89319||3.1438||15087||0.5436||230||2421||5337||1329||22892||2265   + | Abyss||929||2769174||4||898||41||0||796||601||95493||3.3611||8641||0.312||171||2480||7793||1635||32717||2337||738||7467||740||7463||2,(0,0,2)  
  |-    |- 
- | ABySS||929||2769174||898||41||0||796||601||95493||3.3611||8641||0.312||171||2480||7793||1635||32717||2364   + | Edena||931||2757686||4||882||9||0||705||711||99275||3.4942||6966||0.2526||188||2463||6962||1672||37100||2293||746||6778||748||6774||2,(0,0,2)  
  |-    |- 
- | Edena||931||2757686||882||9||0||705||711||99275||3.4942||6966||0.2526||188||2463||6962||1672||37100||2331   + | Soap||944||2781524||9||917||47||0||853||597||79607||2.802||11796||0.4241||166||2485||6386||1614||26967||2348||780||6360||782||6348||3,(0,0,3)  
  |-    |- 
- | SOAPdenovo||944||2781524||917||47||0||853||597||79607||2.802||11796||0.4241||166||2485||6386||1614||26967||2371   + | Velvet||1152||2775301||4||1124||49||0||1010||866||89319||3.1438||15087||0.5436||230||2421||5337||1329||22892||2238||941||5312||943||5312||2,(0,0,2)  
  |-bgcolor="#66CCFF"    |-bgcolor="#66CCFF" 
- | CISA||665||2776133||635||48||0||571||388||79805||2.8089||5675||0.2044||100||2551||10533||2460||42008||2463   + | CISA||665||2776108||11||635||50||0||571||388||79806||2.809||5651||0.2036||100||2551||10533||2460||42008||2446||534||10423||536||10423||2,(0,0,2)  
  |-    |- 
- | Minimus2(EVAS)||569||2769617||559||71||0||531||402||85573||3.012||7624||0.2753||107||2544||10672||2578||42022||2468   + | Minimus2||568||2768999.8||7||560||74||0||530||403||85757||3.0184||7241||0.26149||103||2548||10672||2586||42022||2450||516||10549||518||10467||2,(0,0,2)  
  |-    |- 
    + | GAA||1046||2794624.7||5||956||78||0||870||693||78662||2.76872||14929||0.53414||189||2463||6708||1521||30079||2314||808||6598||810||6597||2,(0,0,2)  
    + |-  
  |}    |} 
    + Please note that the scores of minimus2 and GAA were taken from the average of ten random combinations.