B. cereus
Bacillus cereus strain ATCC_10987. The B. cereus ATCC_10987 consists of a circular chromosome of 5,224,283 bp and one plasmid of 208,369 bp in length, respectively.
Read source
- The paired-end illuminia read data of B. cereus were downloaded from Gage
Sequence assembly
There are eight assemblers, ABySS, CABOG, MaSuRCA, MIRA, SGA, SOAPdenovo, SPAdes 2.5, Velvet, used in the data, and the scaffolding results were downloaded from SPAdes 2.5
Contig integrator
Evaluation
- Benchmark genome
- Evaluated by QUAST
- QUAST (QUAST v2.1)
- Score with QUAST:
| Basic statisitcs | ABySS | CABOD | MaSuRCA | SGA | SOAPdenovo | SPAdes 2.5 | Velvet | CISA |
| # contigs | 74 | 33 | 61 | 341 | 56 | 53 | 78 | 32 |
| Largest contig | 430487 | 1198056 | 1197734 | 106317 | 1194879 | 1202947 | 896381 | 1205706 |
| Total length | 5380708 | 5420940 | 5433046 | 5321914 | 5344353 | 5379795 | 5356258 | 5469099 |
| NG50 | 135613 | 431479 | 337861 | 25512 | 456635 | 485493 | 247748 | 487570 |
| Misassemblies | ||||||||
| # misassemblies | 4 | 15 | 15 | 3 | 1 | 3 | 9 | 11 |
| Misassembled contigs length | 155883 | 1987058 | 765654 | 24763 | 90965 | 94799 | 723259 | 2399227 |
| GAA* | 1150 | 2827068 | 1022 | 219 | 7 | 970 | 952 | 123336 |
| Genome statistics | style="background:#f0f0f0;" | style="background:#f0f0f0;" | ||||||
| MAIA (split4&n) | 505 | 2859291 | 498 | 105 | 120 | 478 | 407 | 103565 |
| minimus2# | 421 | 2863142 | 399 | 206 | 1 | 359 | 343 | 70296 |
| minimus2* | 302 | 2852733 | 302 | 276 | 1 | 308 | 272 | 90585 |