Eshcherichia coli K12 MG1655
Read source
- The illuminia read data of E coli (Paired-end sequencing library with 200 bp inserts) downloaded from Sequence Read Archive (SRA).
Sequence assembly
| Software |
Version |
Parameters |
Download |
| ABySS |
1.3.0 |
k=31 |
Abyss |
| Velvet |
1.1.04 |
k=29 ins_length=215 cov_cutoff=12 exp_cov=24 min_contig_lgth=100 scaffolding=no |
Velvet |
| Edena |
3 |
m=30 |
Edena |
| SOAPdenovo |
1.05 |
K=29 M=3 |
SOAPdenovo |
| CLC |
4.7.2 |
insert_size_range=194,236 minimum_contig_length=100 |
CLC |
Merged File: Set1_Contig
| Abyss parameter |
Download |
| k=29 |
Abyss_k29 |
| k=31 |
Abyss_k31 |
| k=33 |
Abyss_k33 |
| SOAPdenovo parameter |
Download |
| k=29 |
SOAP_k29 |
| k=31 |
SOAP_k31 |
| k=33 |
SOAP_k33 |
Contig integrator
| Input |
Download |
| Set1 |
CISA_Set1 |
| Set2 |
CISA_Set2 |
| Set3 |
CISA_Set3 |
| Set2+Set3 |
CISA_Set2&3 |
| Input |
Download |
| Set1 |
minimus2_Set1 |
Evaluation
- Benchmark genome
- Evaluate by Mauve Assembly Metrics
