Ecoli

Revision as of 01 December 2011 20:51 by admin (Comments | Contribs)

Eshcherichia coli K12 MG1655


Read source

The illuminia read data of E coli (36 bp pairwere downloaded from Sequence Read Archive (SRA).

Sequence assembly

  • Set1
Software Version Parameters
ABySS 1.3.0 k=31
Velvet 1.1.04 k=29 ins_length=215 cov_cutoff=12 exp_cov=24 min_contig_lgth=100 scaffolding=no
Edena 3 m=30
SOAPdenovo 1.05 K=29 M=3
CLC 4.7.2 insert_size_range=194,236 minimum_contig_length=100
  • Set2
Abyss parameter Download
k=29 Abyss_k29
k=31 Abyss_k31
k=33 Abyss_k33
  • Set3
SOAPdenovo parameter Download
k=29 SOAP_k29
k=31 SOAP_k31
k=33 SOAP_k33

Contig integrator

  • CISA
Input Download
Set1 CISA_Set1
Set2 CISA_Set2
Set3 CISA_Set3
Set2+Set3 CISA_Set2&3
  • minimus2
Input Download
Set1 minimus2_Set1