E coli 100 all2
| Name | NumContigs | NumRefReplicons | NumAssemblyBases | NumReferenceBases | NumLCBs | DCJ_Distance | NumDCJBlocks | NumSNPs | NumMisCalled | NumUnCalled | NumGapsRef | NumGapsAssembly | TotalBasesMissed | PercBasesMissed | ExtraBases | PercExtraBases | MissingChromosomes | ExtraContigs | NumSharedBoundaries | NumInterLcbBoundaries | BrokenCDS | IntactCDS | ContigN50^ | ContigN90 | MinContigLength | MaxContigLength | N50^ | Blast | Units(>200) | N50^ | cor.Units | cor.N50 | Error,(Indel>=5,Inv,Rel) |
| A_E.m2.fasta | 115 | 1 | 4621932 | 4639675 | 2 | 97 | 98 | 78 | 78 | 0 | 121 | 109 | 58491 | 1.2607 | 22851 | 0.4944 | 0 | 18 | 1 | 0 | 64 | 4256 | 81936 | 25717 | 198 | 222525 | 83025 | 4234 | 114 | 81936 | 120 | 70581 | 8,(5,0,3) |
| A_S.m2.fasta | 137 | 1 | 4651710 | 4639675 | 2 | 111 | 112 | 269 | 269 | 0 | 142 | 126 | 68144 | 1.4687 | 62523 | 1.3441 | 0 | 26 | 1 | 0 | 80 | 4240 | 71818 | 24405 | 113 | 222417 | 76987 | 4232 | 122 | 76987 | 129 | 62530 | 9,(6,0,3) |
| A_V.m2.fasta | 109 | 1 | 4561228 | 4639675 | 10 | 98 | 100 | 152 | 152 | 0 | 125 | 116 | 169693 | 3.6574 | 45947 | 1.0073 | 0 | 14 | 1 | 4 | 74 | 4246 | 80921 | 25721 | 163 | 222411 | 83032 | 4155 | 107 | 83032 | 121 | 69083 | 13,(5,3,5) |
| E_A.m2.fasta | 114 | 1 | 4603015 | 4639675 | 2 | 96 | 97 | 75 | 75 | 0 | 120 | 108 | 76532 | 1.6495 | 21975 | 0.4774 | 0 | 18 | 1 | 0 | 62 | 4258 | 81936 | 25717 | 198 | 222525 | 83025 | 4221 | 113 | 81936 | 119 | 70581 | 8,(5,0,3) |
| E_S.m2.fasta | 225 | 1 | 4603180 | 4639675 | 2 | 189 | 190 | 169 | 169 | 0 | 170 | 167 | 104866 | 2.2602 | 27739 | 0.6026 | 0 | 35 | 1 | 0 | 92 | 4228 | 43550 | 10813 | 151 | 116269 | 44099 | 4164 | 221 | 43550 | 222 | 41922 | 3,(1,1,1) |
| E_V.m2.fasta | 190 | 1 | 4594054 | 4639675 | 14 | 174 | 177 | 148 | 148 | 0 | 161 | 163 | 108118 | 2.3303 | 30522 | 0.6644 | 0 | 22 | 1 | 4 | 87 | 4233 | 47048 | 12130 | 149 | 161826 | 47643 | 4169 | 189 | 47643 | 201 | 44201 | 12,(4,6,2) |
| S_A.m2.fasta | 135 | 1 | 4700242 | 4639675 | 2 | 107 | 108 | 250 | 250 | 0 | 134 | 122 | 69877 | 1.5061 | 62227 | 1.3239 | 0 | 28 | 1 | 0 | 78 | 4242 | 71817 | 24405 | 115 | 222416 | 76987 | 4232 | 122 | 76987 | 127 | 64914 | 8,(5,0,3) |
| S_E.m2.fasta | 221 | 1 | 4602753 | 4639675 | 2 | 189 | 190 | 284 | 284 | 0 | 173 | 167 | 103100 | 2.2221 | 27959 | 0.6074 | 0 | 32 | 1 | 0 | 91 | 4229 | 44099 | 10813 | 151 | 116269 | 44296 | 4163 | 217 | 44099 | 219 | 42370 | 3,(1,1,1) |
| S_V.m2.fasta | 211 | 1 | 4519527 | 4639675 | 9 | 178 | 180 | 164 | 164 | 0 | 179 | 182 | 191337 | 4.1239 | 31657 | 0.7004 | 0 | 35 | 1 | 3 | 82 | 4238 | 47039 | 11721 | 150 | 161836 | 47631 | 4119 | 202 | 45908 | 215 | 44098 | 14,(5,5,4) |
| V_A.m2.fasta | 107 | 1 | 4497254 | 4639675 | 16 | 97 | 99 | 181 | 181 | 0 | 129 | 114 | 232438 | 5.0098 | 44805 | 0.9963 | 0 | 15 | 1 | 8 | 75 | 4245 | 80921 | 26897 | 163 | 222411 | 83033 | 4095 | 106 | 83033 | 119 | 69083 | 13,(5,3,5) |
| V_E.m2.fasta | 190 | 1 | 4596978 | 4639675 | 18 | 178 | 181 | 168 | 168 | 0 | 167 | 170 | 104187 | 2.2456 | 29759 | 0.6474 | 0 | 21 | 1 | 5 | 84 | 4236 | 47643 | 12130 | 149 | 161826 | 47831 | 4171 | 189 | 47643 | 201 | 45414 | 12,(4,6,2) |
| V_S.m2.fasta | 214 | 1 | 4565564 | 4639675 | 13 | 183 | 185 | 224 | 224 | 0 | 182 | 187 | 100680 | 2.17 | 11231 | 0.246 | 0 | 36 | 1 | 5 | 83 | 4237 | 47746 | 11721 | 150 | 161837 | 48004 | 4169 | 201 | 47746 | 214 | 47039 | 14,(5,5,4) |
| A_E.gaa.fa.fas | 192 | 1 | 4647990 | 4639675 | 2 | 116 | 117 | 163 | 87 | 76 | 146 | 118 | 47994 | 1.0344 | 25214 | 0.5425 | 0 | 76 | 1 | 0 | 73 | 4247 | 66424 | 20705 | 100 | 222524 | 68560 | 4244 | 135 | 68560 | 134 | 68561 | 3,(0,0,3) |
| A_S.gaa.fa.fas | 190 | 1 | 4644821 | 4639675 | 2 | 114 | 115 | 200 | 124 | 76 | 147 | 120 | 49705 | 1.0713 | 24083 | 0.5185 | 0 | 76 | 1 | 0 | 76 | 4244 | 68584 | 22153 | 102 | 222412 | 69083 | 4246 | 132 | 69083 | 131 | 69083 | 3,(0,0,3) |
| A_V.gaa.fa.fas | 187 | 1 | 4646249 | 4639675 | 2 | 113 | 114 | 176 | 101 | 75 | 149 | 116 | 49027 | 1.0567 | 23904 | 0.5145 | 0 | 74 | 1 | 0 | 74 | 4246 | 71815 | 22180 | 102 | 222412 | 76986 | 4248 | 131 | 76986 | 131 | 71810 | 5,(2,0,3) |
| E_A.gaa.fa.fas | 421 | 1 | 4611298 | 4639675 | 2 | 329 | 330 | 35 | 35 | 0 | 279 | 269 | 70734 | 1.5245 | 11034 | 0.2393 | 0 | 92 | 1 | 0 | 143 | 4177 | 24191 | 6689 | 100 | 104739 | 24375 | 4058 | 377 | 24375 | 359 | 24375 | 2,(1,0,1) |
| E_S.gaa.fa.fas | 424 | 1 | 4593644 | 4639675 | 2 | 333 | 334 | 63 | 63 | 0 | 282 | 278 | 79938 | 1.7229 | 7850 | 0.1709 | 0 | 91 | 1 | 0 | 144 | 4176 | 24389 | 6676 | 100 | 104748 | 24632 | 4056 | 377 | 24389 | 372 | 24389 | 3,(1,1,1) |
| E_V.gaa.fa.fas | 423 | 1 | 4596515 | 4639675 | 2 | 330 | 331 | 69 | 69 | 0 | 287 | 274 | 79891 | 1.7219 | 10044 | 0.2185 | 0 | 93 | 1 | 0 | 144 | 4176 | 24382 | 6675 | 100 | 104739 | 24632 | 4054 | 378 | 24382 | 366 | 24378 | 3,(1,1,1) |
| S_A.gaa.fa.fas | 559 | 1 | 4632385 | 4639675 | 2 | 273 | 274 | 118 | 118 | 0 | 246 | 259 | 89349 | 1.9258 | 11441 | 0.247 | 0 | 286 | 1 | 0 | 109 | 4211 | 31788 | 7901 | 100 | 106314 | 31849 | 4122 | 355 | 31849 | 331 | 31845 | 3,(1,0,2) |
| S_E.gaa.fa.fas | 561 | 1 | 4610906 | 4639675 | 2 | 272 | 273 | 166 | 166 | 0 | 245 | 252 | 99902 | 2.1532 | 8092 | 0.1755 | 0 | 289 | 1 | 0 | 109 | 4211 | 31913 | 7901 | 100 | 105667 | 32166 | 4111 | 357 | 32166 | 352 | 32167 | 3,(1,0,2) |
| S_V.gaa.fa.fas | 562 | 1 | 4602062 | 4639675 | 2 | 275 | 276 | 212 | 212 | 0 | 252 | 261 | 108734 | 2.3436 | 7976 | 0.1733 | 0 | 287 | 1 | 0 | 111 | 4209 | 31788 | 7901 | 100 | 105719 | 31837 | 4109 | 357 | 31837 | 355 | 31837 | 3,(1,0,2) |
| V_A.gaa.fa.fas | 196 | 1 | 4638405 | 4639675 | 14 | 128 | 130 | 237 | 158 | 79 | 148 | 143 | 55741 | 1.2014 | 20672 | 0.4457 | 0 | 75 | 1 | 4 | 69 | 4251 | 71909 | 18783 | 149 | 215971 | 77822 | 4229 | 161 | 77822 | 154 | 68585 | 15,(5,5,5) |
| V_E.gaa.fa.fas | 265 | 1 | 4594601 | 4639675 | 15 | 190 | 192 | 139 | 106 | 33 | 179 | 178 | 85057 | 1.8333 | 10168 | 0.2213 | 0 | 81 | 1 | 6 | 85 | 4235 | 47048 | 11188 | 100 | 161826 | 47643 | 4174 | 228 | 47048 | 235 | 44201 | 14,(5,5,4) |
| V_S.gaa.fa.fas | 267 | 1 | 4579080 | 4639675 | 18 | 202 | 204 | 184 | 149 | 35 | 189 | 201 | 92125 | 1.9856 | 5833 | 0.1274 | 0 | 74 | 1 | 6 | 83 | 4237 | 47039 | 11192 | 149 | 161836 | 47631 | 4176 | 229 | 47039 | 242 | 44098 | 16,(4,7,5) |
[^] Please note that the ContigN50 calculated by Mauve Assembly Metrics is incorrect (off-by-one error). We have followed the definition of N50 (A contig N50 is calculated by first ordering every contig by length from longest to shortest. Next, starting from the longest contig, the lengths of each contig are summed, until this running sum equals one-half of the total length of all contigs in the assembly. The contig N50 of the assembly is the length of the shortest contig in this list. ref) to calculate N50s. GAGE's N50 was calculated using the total reference genome length rather than the sum total of contig lengths. The GAGE's cor.N50 values were computed after correcting contigs by breaking them at each error.