E coli 36 all2

Name	NumContigs	NumRefReplicons	NumAssemblyBases	NumReferenceBases	NumLCBs	DCJ_Distance	NumDCJBlocks	NumSNPs	NumMisCalled	NumUnCalled	NumGapsRef	NumGapsAssembly	TotalBasesMissed	PercBasesMissed	ExtraBases	PercExtraBases	MissingChromosomes	ExtraContigs	NumSharedBoundaries	NumInterLcbBoundaries	BrokenCDS	IntactCDS	ContigN50^	ContigN90	MinContigLength	MaxContigLength	N50^	Blast	Units(>200)	N50^	cor.Units	cor.N50	Error,(Indel>=5,Inv,Rel)
A_C.m2.fasta	118	1	4632801	4639675	4	102	103	310	310	0	120	108	60508	1.3041	33636	0.726	0	17	1	1	52	4268	96511	25328	100	222423	105944	4269	105	105944	112	95959	7,(5,0,2)
A_E.m2.fasta	80	1	4622336	4639675	2	69	70	246	246	0	85	85	48361	1.0423	22945	0.4964	0	11	1	0	51	4269	119107	35440	122	226190	126232	4275	78	126232	89	113511	12,(9,0,3)
A_S.m2.fasta	128	1	4627108	4639675	8	112	115	350	350	0	130	124	55903	1.2049	29806	0.6442	0	19	1	1	56	4264	92932	25328	105	268389	96511	4250	108	96511	115	92933	7,(6,0,1)
A_V.m2.fasta	116	1	4661531	4639675	2	96	97	357	357	0	117	118	74219	1.5997	73288	1.5722	0	20	1	0	56	4264	105944	26693	100	222423	107040	4252	99	107040	107	95959	9,(7,0,2)
C_A.m2.fasta	118	1	4632801	4639675	2	101	102	297	297	0	117	108	60609	1.3063	38416	0.8292	0	17	1	0	54	4266	96511	25328	100	222423	105944	4269	105	105944	112	95959	7,(5,0,2)
C_E.m2.fasta	104	1	4587525	4639675	5	94	95	66	66	0	103	91	100426	2.1645	38321	0.8353	0	11	1	2	45	4275	101122	24930	123	209804	105835	4261	101	105835	108	101122	7,(3,2,2)
C_S.m2.fasta	327	1	4536804	4639675	9	293	294	124	124	0	290	288	128041	2.7597	4775	0.1053	0	36	1	4	59	4261	29937	8447	108	107343	30103	4223	286	29775	287	28466	2,(0,1,1)
C_V.m2.fasta	179	1	4589403	4639675	7	146	147	174	174	0	159	160	128909	2.7784	41861	0.9121	0	35	1	3	57	4263	63294	15280	100	184379	63512	4247	154	63512	163	60714	9,(6,0,3)
E_A.m2.fasta	80	1	4622436	4639675	2	70	71	244	244	0	85	85	48894	1.0538	24574	0.5316	0	10	1	0	52	4268	119107	35440	122	226190	126232	4275	78	126232	89	113511	12,(10,0,2)
E_C.m2.fasta	105	1	4587576	4639675	5	94	95	66	66	0	102	90	83511	1.7999	21336	0.4651	0	12	2	2	49	4271	101133	24930	123	209804	105835	4261	102	101133	108	101133	6,(2,2,2)
E_S.m2.fasta	135	1	4568724	4639675	2	121	122	93	93	0	119	110	84290	1.8167	4832	0.1058	0	14	1	0	66	4254	77079	18177	122	209786	77696	4226	131	77696	134	77079	5,(2,1,2)
E_V.m2.fasta	118	1	4612692	4639675	2	102	103	110	110	0	103	98	115498	2.4894	79703	1.7279	0	16	1	0	59	4261	86507	24325	122	209787	86974	4221	114	86974	120	83136	8,(5,1,2)
S_A.m2.fasta	128	1	4627108	4639675	11	113	117	346	346	0	131	126	55948	1.2059	30419	0.6574	0	20	1	1	55	4265	92932	25328	105	268389	96511	4250	108	96511	115	92933	7,(6,0,1)
S_C.m2.fasta	326	1	4536681	4639675	10	296	297	159	159	0	294	291	125769	2.7107	4857	0.1071	0	33	1	5	59	4261	29937	8447	108	107343	30103	4223	285	29775	286	28466	2,(0,1,1)
S_E.m2.fasta	135	1	4568686	4639675	2	121	122	88	88	0	119	110	84235	1.8155	4739	0.1037	0	14	1	0	65	4255	77079	18177	122	209786	77696	4226	131	77696	134	77079	5,(2,1,2)
S_V.m2.fasta	243	1	4549600	4639675	2	193	194	246	246	0	204	194	115159	2.482	3408	0.0749	0	50	1	0	72	4248	56801	12713	103	166923	57725	4202	197	56801	205	54360	9,(6,0,3)
V_A.m2.fasta	116	1	4661902	4639675	2	96	97	349	349	0	119	119	74234	1.6	73676	1.5804	0	20	1	0	57	4263	105944	26693	100	222423	107040	4252	99	107040	107	95959	9,(7,0,2)
V_C.m2.fasta	181	1	4591015	4639675	6	147	148	236	236	0	161	165	131013	2.8238	45805	0.9977	0	36	1	2	58	4262	63294	15280	100	184379	63512	4247	155	63512	163	60714	9,(6,0,3)
V_E.m2.fasta	117	1	4608607	4639675	2	101	102	120	120	0	108	97	112002	2.414	72122	1.5649	0	16	1	0	58	4262	86974	24325	122	209787	96641	4221	113	96641	119	86505	8,(5,1,2)
V_S.m2.fasta	245	1	4550043	4639675	2	190	191	133	133	0	198	185	115722	2.4942	3563	0.0783	0	55	1	0	72	4248	56801	12713	103	166923	57725	4202	198	56801	207	54360	9,(5,0,4)
A_C.gaa.fa.fas	140	1	4627307	4639675	2	111	112	345	311	34	124	121	57571	1.2408	29878	0.6457	0	29	1	0	57	4263	92933	25329	100	222425	96511	4256	110	96511	116	92933	6,(5,0,1)
A_E.gaa.fa.fas	136	1	4638015	4639675	2	105	106	361	327	34	117	113	54792	1.1809	28878	0.6226	0	31	1	0	57	4263	92933	25197	100	222425	96511	4258	111	96511	116	92933	6,(5,0,1)
A_S.gaa.fa.fas	135	1	4626731	4639675	2	109	110	370	336	34	122	119	57623	1.242	29389	0.6352	0	26	1	0	57	4263	92933	25329	100	222425	96511	4250	110	96511	116	92933	6,(5,0,1)
A_V.gaa.fa.fas	134	1	4626634	4639675	2	107	108	370	336	34	123	119	57749	1.2447	29366	0.6347	0	27	1	0	57	4263	92933	26096	100	222425	96511	4249	109	96511	116	92933	7,(5,0,2)
C_A.gaa.fa.fas	380	1	4587208	4639675	11	298	300	286	286	0	293	282	104200	2.2458	12316	0.2685	0	87	1	3	64	4256	28450	8495	100	107342	29767	4241	288	28450	280	28036	2,(0,1,1)
C_E.gaa.fa.fas	379	1	4555312	4639675	5	296	297	92	92	0	279	278	123665	2.6654	3517	0.0772	0	85	1	1	61	4259	29767	8368	100	107342	29905	4232	288	28450	289	28036	2,(0,1,1)
C_S.gaa.fa.fas	383	1	4550534	4639675	5	305	306	142	142	0	298	296	117524	2.533	4222	0.0928	0	80	1	1	62	4258	29775	8368	100	107343	29937	4228	288	28466	290	28036	2,(0,1,1)
C_V.gaa.fa.fas	382	1	4550334	4639675	5	299	300	122	122	0	284	284	116676	2.5147	3551	0.078	0	85	1	1	61	4259	29767	8368	100	107342	29905	4230	288	28577	290	28036	2,(0,1,1)
E_A.gaa.fa.fas	210	1	4602464	4639675	2	151	152	43	43	0	129	127	64510	1.3904	10756	0.2337	0	59	1	0	65	4255	54405	13156	100	186686	58030	4210	181	58030	179	52796	3,(2,0,1)
E_C.gaa.fa.fas	210	1	4570226	4639675	2	152	153	15	15	0	137	122	86539	1.8652	2349	0.0514	0	58	1	0	65	4255	54405	13654	100	186686	57790	4192	181	57790	186	52796	5,(2,2,1)
E_S.gaa.fa.fas	211	1	4571238	4639675	2	153	154	42	42	0	139	133	86271	1.8594	2978	0.0651	0	58	1	0	67	4253	54406	13654	100	186686	57790	4192	182	54406	186	52818	4,(2,1,1)
E_V.gaa.fa.fas	211	1	4570155	4639675	2	153	154	29	29	0	135	125	86669	1.868	2344	0.0513	0	58	1	0	66	4254	54420	13651	100	186686	57790	4191	182	54420	186	52796	4,(2,1,1)
S_A.gaa.fa.fas	552	1	4578180	4639675	2	463	464	63	63	0	449	406	102783	2.2153	10636	0.2323	0	89	1	0	102	4218	17902	5383	100	103369	17944	4146	449	17892	439	17892	1,(0,0,1)
S_C.gaa.fa.fas	558	1	4552640	4639675	2	463	464	48	48	0	449	416	133055	2.8678	7486	0.1644	0	95	1	0	100	4220	17902	5390	100	103374	17944	4143	449	17892	450	17892	1,(0,0,1)
S_E.gaa.fa.fas	553	1	4553014	4639675	2	465	466	35	35	0	451	401	120654	2.6005	6909	0.1517	0	88	1	0	100	4220	17902	5383	100	103369	17944	4132	449	17892	450	17892	1,(0,0,1)
S_V.gaa.fa.fas	554	1	4550719	4639675	2	467	468	56	56	0	458	410	123110	2.6534	7263	0.1596	0	87	1	0	99	4221	17902	5384	100	103372	17944	4140	450	17892	451	17892	1,(0,0,1)
V_A.gaa.fa.fas	284	1	4590316	4639675	2	192	193	188	188	0	197	195	91635	1.975	8907	0.194	0	92	1	0	76	4244	52438	12537	100	166094	52474	4210	217	52474	210	49022	8,(5,0,3)
V_C.gaa.fa.fas	289	1	4553691	4639675	2	202	203	139	139	0	205	201	132814	2.8626	3214	0.0706	0	87	1	0	74	4246	52474	12537	100	166107	54373	4199	217	52474	224	49037	8,(5,0,3)
V_E.gaa.fa.fas	284	1	4561370	4639675	2	199	200	147	147	0	198	195	108649	2.3417	3056	0.067	0	85	1	0	75	4245	52474	12537	100	166094	54420	4197	217	52474	221	49028	8,(5,0,3)
V_S.gaa.fa.fas	285	1	4552937	4639675	2	206	207	206	206	0	216	204	115137	2.4816	3295	0.0724	0	79	1	0	75	4245	52478	12537	100	166095	54360	4197	217	52478	222	49024	8,(5,0,3)

[^] Please note that the ContigN50 calculated by Mauve Assembly Metrics is incorrect (off-by-one error). We have followed the definition of N50 (A contig N50 is calculated by first ordering every contig by length from longest to shortest. Next, starting from the longest contig, the lengths of each contig are summed, until this running sum equals one-half of the total length of all contigs in the assembly. The contig N50 of the assembly is the length of the shortest contig in this list. ref) to calculate N50s. GAGE's N50 was calculated using the total reference genome length rather than the sum total of contig lengths. The GAGE's cor.N50 values were computed after correcting contigs by breaking them at each error.