Ecoli 100

Name	NumContigs	NumAssemblyBases	DCJ_Distance	NumMisCalled	NumUnCalled	NumGapsRef	NumGapsAssembly	TotalBasesMissed	PercBasesMissed	ExtraBases	PercExtraBases	BrokenCDS	IntactCDS	ContigN50^	ContigN90	MaxContigLength	N50^	blast	Units(>200)	N50^	cor.Units	cor.N50	Error,(Indel>=5,Inv,Rel)
A_S_E_V_m2.fasta	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	88066	4114	93	87312	104	69083	13,(8,1,4)
A_S_V_E_m2.fasta	95	4498055	92	419	0	141	118	192181	4.1421	40357	0.8972	80	4240	83035	27852	222529	87312	4119	95	83035	112	60352	17,(8,3,6)
A_E_V_S_m2.fasta	93	4700062	88	212	0	135	103	325690	7.0197	308089	6.555	76	4244	88066	28921	222527	89493	4144	93	89493	105	70581	12,(6,2,4)
E_S_V_A_m2.fasta	96	4704189	85	176	0	123	98	418550	9.0211	365434	7.7683	75	4245	88066	27859	222527	89493	4066	96	89493	104	70581	10,(5,2,3)
E_S_A_V_m2.fasta	93	4518699	86	231	0	127	95	354739	7.6458	129692	2.8701	82	4238	87312	27859	222527	88066	4036	93	88066	103	69083	12,(7,2,3)
S_E_V_A_m2.fasta	95	4653359	83	228	0	123	100	378755	8.1634	333728	7.1718	70	4250	89493	26897	222526	92449	4064	95	97085	104	70581	9,(5,2,2)
S_E_A_V_m2.fasta	93	4480799	87	218	0	125	95	230438	4.9667	50795	1.1336	80	4240	87312	27852	222526	88066	4083	93	88066	103	70581	11,(6,2,3)
S_V_A_E_m2.fasta	92	4559756	88	159	0	129	103	424010	9.1388	332126	7.2839	69	4251	88066	28735	222528	89493	4015	92	88066	108	68586	15,(7,2,6)
V_A_S_E_m2.fasta	94	4451687	93	234	0	133	104	239506	5.1621	43537	0.978	78	4242	83033	27852	252067	87313	4067	94	83033	112	69083	16,(7,3,6)
V_E_A_S_m2.fasta	97	4727254	92	220	0	129	109	339828	7.3244	283355	5.9941	73	4247	83032	27852	222526	83343	4095	97	87313	109	66445	14,(6,5,3)
A_S_E_V_gaa.fas	192	4651534	109	118	76	148	113	47503	1.0238	25664	0.5517	72	4248	71826	22184	222524	76989	4249	131	76989	131	71821	5,(2,0,3)
A_E_V_S_gaa.fas	192	4651534	109	119	76	148	113	47501	1.0238	25662	0.5517	72	4248	71826	22184	222524	76989	4249	131	76989	131	71821	5,(2,0,3)
A_E_S_V_gaa.fas	192	4651534	109	118	76	148	113	47502	1.0238	25663	0.5517	72	4248	71826	22184	222524	76989	4249	131	76989	131	71821	5,(2,0,3)
E_S_A_V_gaa.fas	426	4620144	327	73	0	284	272	67866	1.4627	14165	0.3066	143	4177	24217	6668	104748	24389	4062	378	24389	358	24389	4,(3,0,1)
E_A_S_V_gaa.fas	426	4619478	326	73	0	283	271	68588	1.4783	14039	0.3039	143	4177	24217	6715	104748	24389	4062	378	24389	358	24389	4,(3,0,1)
E_V_S_A_gaa.fas	426	4620286	331	95	3	288	276	66190	1.4266	16989	0.3677	143	4177	24217	6715	104748	24389	4062	378	24389	356	24389	2,(1,0,1)
E_V_A_S_gaa.fas	426	4619902	330	95	3	287	275	66944	1.4429	16895	0.3657	143	4177	24217	6715	104748	24389	4062	378	24389	356	24389	2,(1,0,1)
E_A_V_S_gaa.fas	426	4619602	326	71	0	283	271	68587	1.4783	14039	0.3039	143	4177	24217	6715	104748	24389	4065	378	24389	358	24389	4,(3,0,1)
V_A_E_S_gaa.fas	201	4655377	127	153	78	149	134	57658	1.2427	38463	0.8262	68	4252	72258	18819	215972	77897	4230	161	77897	149	68585	14,(5,5,4)
V_A_S_E_gaa.fas	201	4655472	125	139	78	146	133	55825	1.2032	36177	0.7771	68	4252	72258	18819	215972	77897	4230	161	77897	149	68585	14,(5,5,4)

[^] Please note that the ContigN50 calculated by Mauve Assembly Metrics is incorrect (off-by-one error). We have followed the definition of N50 (A contig N50 is calculated by first ordering every contig by length from longest to shortest. Next, starting from the longest contig, the lengths of each contig are summed, until this running sum equals one-half of the total length of all contigs in the assembly. The contig N50 of the assembly is the length of the shortest contig in this list. ref) to calculate N50s. GAGE's N50 was calculated using the total reference genome length rather than the sum total of contig lengths. The GAGE's cor.N50 values were computed after correcting contigs by breaking them at each error.