Ecoli 36

Name	NumContigs	NumAssemblyBases	DCJ_Distance	NumMisCalled	NumUnCalled	NumGapsRef	NumGapsAssembly	TotalBasesMissed	PercBasesMissed	ExtraBases	PercExtraBases	BrokenCDS	IntactCDS	ContigN50^	ContigN90	MaxContigLength	N50^	blast	Units(>200)	N50^	cor.Units	cor.N50	Error,(Indel>=5,Inv,Rel)
A_C_V_S_E.m2.ctg.fa.fas	78	4687046	68	247	0	96	79	53516	1.1534	88228	1.8824	49	4271	126075	34292	226191	134584	4277	77	134584	86	113511	9,(6,0,3)
A_E_V_C_S.m2.ctg.fa.fas	74	4669773	68	309	0	97	85	72670	1.5663	93457	2.0013	54	4266	126232	35440	226191	134584	4285	73	134584	84	113511	11,(8,0,3)
A_E_C_V_S.m2.ctg.fa.fas	74	4669776	68	310	0	98	85	72565	1.564	93354	1.9991	55	4265	126232	35440	226191	134584	4285	73	134584	84	113511	11,(8,0,3)
A_E_S_C_V.m2.ctg.fa.fas	71	4624346	66	347	0	95	81	69420	1.4962	47814	1.034	55	4265	126232	35440	417704	134584	4285	70	134584	82	113511	12,(8,1,3)
C_S_V_A_E.m2.ctg.fa.fas	75	4707419	68	258	0	95	82	50035	1.0784	99529	2.1143	47	4273	119107	34256	311797	126076	4279	75	126076	85	113511	10,(7,0,3)
E_V_C_A_S.m2.ctg.fa.fas	71	4431391	66	371	0	95	76	393924	8.4903	174191	3.9308	54	4266	119109	35440	312028	126232	4002	70	119109	79	113511	10,(5,2,3)
E_V_S_C_A.m2.ctg.fa.fas	71	4432877	71	360	0	94	81	392528	8.4602	176355	3.9783	50	4270	119107	35440	312028	126232	4002	70	119107	80	113511	10,(5,2,3)
S_V_E_C_A.m2.ctg.fa.fas	71	4382248	63	380	0	94	77	354827	7.6477	81080	1.8502	50	4270	119107	35440	312028	126232	4002	70	119107	80	113511	11,(5,2,4)
V_E_S_A_C.m2.ctg.fa.fas	72	4684456	67	349	0	98	79	48323	1.0415	86808	1.8531	53	4267	119109	35440	311347	126232	4284	71	126232	83	113511	12,(8,2,2)
V_S_E_A_C.m2.ctg.fa.fas	73	4684590	66	302	0	95	78	50808	1.0951	87101	1.8593	51	4269	119109	35440	311347	126232	4284	72	126232	83	113511	12,(8,2,2)
A_S_C_V_E.gaa.ctg.fa.fas	137	4639353	104	304	34	120	114	54365	1.1717	29293	0.6314	56	4264	92933	26096	222425	96511	4258	109	96511	115	92933	7,(5,0,2)
E_S_C_V_A.gaa.ctg.fa.fas	210	4604043	151	56	0	143	134	64561	1.3915	11826	0.2569	65	4255	54420	13156	186686	58030	4211	181	58030	179	52818	3,(2,0,1)
E_C_V_S_A.gaa.ctg.fa.fas	210	4604046	151	56	0	143	134	64563	1.3915	11828	0.2569	65	4255	54420	13156	186686	58030	4211	181	58030	179	52818	3,(2,0,1)
S_V_C_E_A.gaa.ctg.fa.fas	559	4590828	446	92	0	435	407	124680	2.6873	10574	0.2303	101	4219	17902	5361	103375	17944	4159	449	17892	438	17892	1,(0,0,1)
S_C_V_E_A.gaa.ctg.fa.fas	558	4590423	447	76	0	436	408	124853	2.691	10424	0.2271	101	4219	17902	5361	103375	17944	4159	449	17892	438	17892	1,(0,0,1)
V_E_A_S_C.gaa.ctg.fa.fas	286	4599741	188	192	0	195	192	100229	2.1603	8859	0.1926	74	4246	52464	11789	166107	52478	4216	217	52478	205	49038	8,(5,0,3)
V_S_E_C_A.gaa.ctg.fa.fas	287	4599980	188	190	0	194	193	100240	2.1605	8845	0.1923	74	4246	52464	11789	166107	52478	4217	217	52478	206	49038	8,(5,0,3)
V_A_S_C_E.gaa.ctg.fa.fas	286	4599914	188	207	0	197	192	101032	2.1776	9806	0.2132	76	4244	52464	11789	166107	52478	4217	217	52478	207	49038	8,(5,0,3)
V_C_E_S_A.gaa.ctg.fa.fas	289	4600470	190	196	0	195	195	99998	2.1553	8963	0.1948	74	4246	52464	11789	166107	52478	4217	217	52478	206	49038	8,(5,0,3)
V_S_C_E_A.gaa.ctg.fa.fas	288	4600375	188	190	0	194	193	100240	2.1605	9000	0.1956	74	4246	52464	11789	166107	52478	4217	217	52478	206	49038	8,(5,0,3)

[^] Please note that the ContigN50 calculated by Mauve Assembly Metrics is incorrect (off-by-one error). We have followed the definition of N50 (A contig N50 is calculated by first ordering every contig by length from longest to shortest. Next, starting from the longest contig, the lengths of each contig are summed, until this running sum equals one-half of the total length of all contigs in the assembly. The contig N50 of the assembly is the length of the shortest contig in this list. ref) to calculate N50s. GAGE's N50 was calculated using the total reference genome length rather than the sum total of contig lengths. The GAGE's cor.N50 values were computed after correcting contigs by breaking them at each error.