H volc all2

Name	NumContigs	NumRefReplicons	NumAssemblyBases	NumReferenceBases	NumLCBs	DCJ_Distance	NumDCJBlocks	NumSNPs	NumMisCalled	NumUnCalled	NumGapsRef	NumGapsAssembly	TotalBasesMissed	PercBasesMissed	ExtraBases	PercExtraBases	MissingChromosomes	ExtraContigs	NumSharedBoundaries	NumInterLcbBoundaries	BrokenCDS	IntactCDS	ContigN50^	ContigN90	MinContigLength	MaxContigLength	N50^	Blast	Units(>200)	N50^	cor.Units	cor.N50	Error,(Indel>=5,Inv,Rel)
1_2.m2.fa	88	5	4044409	4012900	15	88	93	1103	558	545	235	121	86674	2.1599	112904	2.7916	0	5	1	8	134	3881	137837	20480	447	289094	146574	3982	88	146574	106	94894	17,(13,0,4)
1_3.m2.fa	85	5	3942969	4012900	23	88	91	1024	165	859	448	164	153460	3.8242	85633	2.1718	0	5	0	15	218	3797	150060	17200	263	312972	169911	3917	85	169911	307	27595	215,(204,6,5)
2_1.m2.fa	87	5	4044428	4012900	15	84	89	1109	564	545	228	120	89780	2.2373	112699	2.7865	0	7	1	9	133	3882	137837	20480	447	289095	146572	3981	87	146572	107	94273	19,(15,0,4)
2_3.m2.fa	363	5	4517347	4012900	97	398	403	2476	1136	1340	955	695	404544	10.0811	860808	19.0556	0	3	1	57	431	3584	22506	6499	291	72168	22526	3667	363	25451	824	9141	403,(383,6,14)
3_1.m2.fa	85	5	3942775	4012900	31	92	97	1089	248	841	456	172	154926	3.8607	87783	2.2264	0	4	0	18	221	3794	150060	17200	263	312956	169911	3917	85	169911	308	27758	215,(203,6,6)
3_2.m2.fa	363	5	4517334	4012900	99	399	405	2500	1173	1327	949	696	399668	9.9596	864926	19.1468	0	3	1	57	429	3586	22508	6499	291	72168	22526	3665	363	25451	826	9141	406,(383,8,15)
1_2.gaa.fa	160	5	3950416	4012900	10	111	116	83	83	0	136	118	121506	3.0279	28424	0.7195	0	49	1	8	34	3981	123582	13094	100	220464	127533	3960	143	123582	132	121295	8,(3,0,5)
1_3.gaa.fa	154	5	3933663	4012900	10	113	118	62	61	1	141	121	113135	2.8193	6382	0.1622	0	42	1	7	39	3976	127563	11511	100	217359	137160	3966	142	137160	136	127563	9,(3,1,5)
2_1.gaa.fa	1474	5	3884602	4012900	381	1526	1535	2268	742	1526	1439	1404	185093	4.6124	16986	0.4373	0	143	1	180	424	3591	11685	2033	100	73489	11696	3238	916	11146	1203	6467	200,(153,1,46)
2_3.gaa.fa	1434	5	3963125	4012900	367	1426	1435	2318	857	1461	1413	1355	203176	5.0631	108599	2.7402	0	192	1	177	424	3591	16439	2126	100	62580	16466	3294	876	16398	1186	7361	217,(169,0,48)
3_1.gaa.fa	402	5	3895840	4012900	66	408	413	1599	1042	557	884	788	149223	3.7186	24522	0.6294	0	19	1	39	381	3634	18586	5207	101	90775	19143	3585	401	17624	902	7641	493,(474,8,11)
3_2.gaa.fa	534	5	3980988	4012900	70	546	551	1467	904	563	1005	916	177185	4.4154	141339	3.5503	0	15	1	41	409	3606	15438	4350	100	68263	15496	3513	493	15438	1012	6972	494,(473,8,13)

[^] Please note that the ContigN50 calculated by Mauve Assembly Metrics is incorrect (off-by-one error). We have followed the definition of N50 (A contig N50 is calculated by first ordering every contig by length from longest to shortest. Next, starting from the longest contig, the lengths of each contig are summed, until this running sum equals one-half of the total length of all contigs in the assembly. The contig N50 of the assembly is the length of the shortest contig in this list. ref) to calculate N50s. GAGE's N50 was calculated using the total reference genome length rather than the sum total of contig lengths. The GAGE's cor.N50 values were computed after correcting contigs by breaking them at each error.