Saureus 101 all2

Name	NumContigs	NumRefReplicons	NumAssemblyBases	NumReferenceBases	NumLCBs	DCJ_Distance	NumDCJBlocks	NumSNPs	NumMisCalled	NumUnCalled	NumGapsRef	NumGapsAssembly	TotalBasesMissed	PercBasesMissed	ExtraBases	PercExtraBases	MissingChromosomes	ExtraContigs	NumSharedBoundaries	NumInterLcbBoundaries	BrokenCDS	IntactCDS	ContigN50^	ContigN90	MinContigLength	MaxContigLength	N50^	Blast	Units(>200)	N50^	cor.Units	cor.N50	Error,(Indel>=5,Inv,Rel)
A_E.m2.fasta	515	3	2854449	2903081	24	497	500	118	117	1	367	428	69972	2.4103	8167	0.2861	0	29	1	11	190	2503	10112	2917	121	35461	10276	2336	499	10066	509	10066	10,(2,1,7)
A_S.m2.fasta	397	3	2854941	2903081	24	371	373	297	296	1	357	317	69065	2.379	9831	0.3444	0	38	1	11	126	2567	13726	4257	104	53213	13838	2448	363	13726	375	13321	10,(4,1,5)
A_V.m2.fasta	366	3	2860815	2903081	38	363	365	274	273	1	346	303	76398	2.6316	18118	0.6333	0	26	1	14	127	2566	15011	4524	102	54747	15358	2462	329	15011	346	14746	17,(7,5,5)
E_A.m2.fasta	518	3	2859069	2903081	23	500	503	128	127	1	373	433	69831	2.4054	12798	0.4476	0	28	1	11	193	2500	10107	2917	121	35461	10112	2336	502	10066	511	10066	10,(2,1,7)
E_S.m2.fasta	455	3	2871820	2903081	9	432	434	177	176	1	406	361	64401	2.2184	16572	0.5771	0	28	1	3	144	2549	10982	3585	127	52790	11010	2413	440	10982	444	10953	7,(2,0,5)
E_V.m2.fasta	388	3	2876739	2903081	24	374	378	321	320	1	325	336	64801	2.2321	21625	0.7517	0	28	1	7	124	2569	13310	3911	127	54726	13398	2446	376	13310	393	13005	18,(7,4,7)
S_A.m2.fasta	405	3	2858992	2903081	24	374	375	128	127	1	352	308	72905	2.5113	12607	0.441	0	42	1	13	126	2567	13484	4327	104	53213	13726	2446	367	13484	378	13321	9,(3,0,6)
S_E.m2.fasta	453	3	2870902	2903081	12	429	431	189	188	1	406	357	65504	2.2564	16228	0.5653	0	30	1	5	147	2546	10982	3585	127	52790	11010	2411	438	10982	442	10953	6,(2,0,4)
S_V.m2.fasta	418	3	2852937	2903081	15	379	380	143	142	1	373	335	79576	2.7411	17438	0.6112	0	44	1	10	138	2555	13753	4331	104	54766	13796	2429	379	13753	392	13317	17,(8,4,5)
V_A.m2.fasta	356	3	2870916	2903081	23	344	346	339	338	1	328	290	65892	2.2697	17299	0.6026	0	26	1	8	124	2569	16840	4553	102	54747	16984	2482	322	16840	338	15660	20,(7,5,8)
V_E.m2.fasta	387	3	2874341	2903081	22	364	367	229	228	1	315	327	65774	2.2657	18885	0.657	0	33	1	10	124	2569	13398	4062	127	54726	13460	2447	374	13398	390	13005	19,(7,4,8)
V_S.m2.fasta	391	3	2851783	2903081	25	363	364	139	138	1	354	318	79432	2.7361	16040	0.5625	0	38	1	15	135	2558	14883	4444	104	54766	14940	2444	360	14883	375	14286	17,(8,4,5)
A_E.gaa.fa.fas	667	3	2864202	2903081	14	578	578	211	207	4	426	493	68933	2.3745	9605	0.3353	0	97	1	7	206	2487	9223	2509	100	35461	9229	2309	548	9154	554	9115	7,(2,0,5)
A_S.gaa.fa.fas	681	3	2870009	2903081	17	588	589	148	142	6	464	488	66966	2.3067	13688	0.4769	0	101	1	9	213	2480	9229	2542	100	35460	9243	2313	548	9154	556	9115	8,(2,0,6)
A_V.gaa.fa.fas	667	3	2867252	2903081	14	584	585	163	157	6	452	497	67349	2.3199	12645	0.441	0	89	1	8	212	2481	9229	2523	100	35459	9238	2314	548	9216	556	9115	9,(2,1,6)
E_A.gaa.fa.fas	3307	3	2580131	2903081	6	3137	3139	331	329	2	2943	3027	374365	12.8954	17298	0.6704	0	173	1	2	780	1913	1265	363	100	8680	1266	1066	2681	1095	2680	1094	6,(2,0,4)
E_S.gaa.fa.fas	3305	3	2579087	2903081	6	3133	3135	300	299	1	2948	3026	376278	12.9613	17107	0.6633	0	175	1	2	782	1911	1265	363	100	8682	1266	1065	2686	1091	2686	1090	4,(1,0,3)
E_V.gaa.fa.fas	3293	3	2571324	2903081	6	3135	3137	258	257	1	2945	3030	381203	13.131	16884	0.6566	0	161	1	2	782	1911	1266	363	100	8708	1268	1061	2683	1086	2682	1085	5,(1,0,4)
S_A.gaa.fa.fas	676	3	2882281	2903081	3	516	517	115	113	2	482	432	67764	2.3342	13224	0.4588	0	161	1	2	155	2538	9626	3061	100	47607	9762	2374	509	9626	509	9626	3,(2,0,1)
S_E.gaa.fa.fas	676	3	2880039	2903081	3	514	515	77	76	1	477	433	68261	2.3513	13610	0.4726	0	163	1	2	152	2541	9697	3047	100	47739	9791	2364	509	9697	511	9697	3,(2,0,1)
S_V.gaa.fa.fas	677	3	2877349	2903081	3	529	530	126	125	1	500	462	67656	2.3305	12545	0.436	0	149	1	2	159	2534	9626	3133	100	47607	9762	2363	509	9626	511	9626	3,(2,0,1)
V_A.gaa.fa.fas	484	3	2873624	2903081	17	413	413	245	228	17	393	353	61932	2.1333	10100	0.3515	0	81	1	8	140	2553	13398	4000	101	54747	13484	2455	386	13398	397	13138	18,(9,4,5)
V_E.gaa.fa.fas	504	3	2866775	2903081	20	430	431	238	222	16	373	383	64084	2.2074	8999	0.3139	0	86	1	8	133	2560	12962	3789	101	54726	13005	2433	405	12685	422	12217	19,(10,4,5)
V_S.gaa.fa.fas	510	3	2867597	2903081	16	438	438	150	133	17	421	383	64380	2.2176	10117	0.3528	0	81	1	8	148	2545	13045	3811	100	54766	13168	2426	403	12685	420	12217	19,(10,4,5)

[^] Please note that the ContigN50 calculated by Mauve Assembly Metrics is incorrect (off-by-one error). We have followed the definition of N50 (A contig N50 is calculated by first ordering every contig by length from longest to shortest. Next, starting from the longest contig, the lengths of each contig are summed, until this running sum equals one-half of the total length of all contigs in the assembly. The contig N50 of the assembly is the length of the shortest contig in this list. ref) to calculate N50s. GAGE's N50 was calculated using the total reference genome length rather than the sum total of contig lengths. The GAGE's cor.N50 values were computed after correcting contigs by breaking them at each error.