Saureus 35

Name	NumContigs	NumRefReplicons	NumAssemblyBases	NumReferenceBases	NumLCBs	DCJ_Distance	NumDCJBlocks	NumSNPs	NumMisCalled	NumUnCalled	NumGapsRef	NumGapsAssembly	TotalBasesMissed	PercBasesMissed	ExtraBases	PercExtraBases	MissingChromosomes	ExtraContigs	NumSharedBoundaries	NumInterLcbBoundaries	BrokenCDS	IntactCDS	ContigN50^	ContigN90	MinContigLength	MaxContigLength	N50^	blast	Units(>200)	N50^	cor.Units	cor.N50	Error,(Indel>=5,Inv,Rel)
A_S_E_V.m2.ctg.fa.fas	568	2	2769736	2841116	10	560	562	70	70	0	532	403	85722	3.0172	7648	0.2761	0	11	1	5	107	2544	10672	2589	108	42022	11094	2451	515	10549	517	10467	2,(0,0,2)
A_S_V_E.m2.ctg.fa.fas	568	2	2768942	2841116	10	560	562	67	67	0	532	402	85728	3.0174	6860	0.2477	0	11	1	5	107	2544	10672	2589	108	42022	11094	2450	515	10549	517	10467	2,(0,0,2)
A_V_S_E.m2.ctg.fa.fas	568	2	2768793	2841116	4	560	562	63	63	0	529	401	85334	3.0035	6793	0.2453	0	9	1	1	106	2545	10672	2589	108	42022	11094	2450	515	10549	517	10467	2,(0,0,2)
A_E_V_S.m2.ctg.fa.fas	568	2	2768415	2841116	6	562	564	70	70	0	532	407	86175	3.0331	7558	0.273	0	7	1	3	99	2552	10672	2578	108	42022	11094	2449	516	10549	518	10467	2,(0,0,2)
E_V_S_A.m2.ctg.fa.fas	568	2	2769559	2841116	7	561	563	72	72	0	532	404	85534	3.0106	7539	0.2722	0	10	1	2	101	2550	10672	2589	108	42022	11094	2450	517	10549	520	10467	3,(1,0,2)
E_A_V_S.m2.ctg.fa.fas	568	2	2768415	2841116	8	561	563	90	90	0	528	405	86533	3.0457	7599	0.2745	0	9	1	4	95	2556	10672	2578	108	42022	11094	2449	516	10549	518	10467	2,(0,0,2)
S_A_V_E.m2.ctg.fa.fas	568	2	2768941	2841116	4	558	560	84	84	0	527	399	85380	3.0052	6755	0.244	0	11	1	1	107	2544	10672	2589	108	42022	11094	2450	515	10549	517	10467	2,(0,0,2)
S_V_E_A.m2.ctg.fa.fas	567	2	2769768	2841116	4	557	559	82	82	0	526	400	85268	3.0012	7470	0.2697	0	11	1	1	107	2544	10672	2589	108	42022	11094	2451	516	10549	518	10467	2,(0,0,2)
S_E_V_A.m2.ctg.fa.fas	568	2	2769712	2841116	9	561	563	63	63	0	532	406	85390	3.0055	7536	0.2721	0	11	1	3	97	2554	10672	2578	108	42022	11094	2450	517	10549	519	10467	2,(0,0,2)
V_A_E_S.m2.ctg.fa.fas	569	2	2767717	2841116	4	559	561	74	74	0	528	401	86501	3.0446	6652	0.2403	0	11	1	1	106	2545	10672	2589	108	42022	11094	2448	517	10549	519	10467	2,(0,0,2)
A_S_E_V.gaa.ctg.fa.fas	974	2	2793850	2841116	4	885	887	152	152	0	822	632	78055	2.7473	13505	0.4834	0	89	1	2	169	2482	7758	1589	100	32731	7796	2349	736	7511	738	7511	3,(0,0,3)
A_S_V_E.gaa.ctg.fa.fas	975	2	2794180	2841116	4	887	889	107	107	0	821	632	77989	2.745	13646	0.4884	0	88	1	2	169	2482	7758	1589	100	32731	7796	2349	736	7511	738	7511	3,(0,0,3)
A_E_S_V.gaa.ctg.fa.fas	976	2	2793866	2841116	4	888	890	89	89	0	823	636	77741	2.7363	13539	0.4846	0	88	1	2	170	2481	7758	1589	100	32731	7796	2349	736	7511	738	7511	2,(0,0,2)
A_V_S_E.gaa.ctg.fa.fas	977	2	2794330	2841116	4	885	887	92	92	0	819	630	78173	2.7515	13490	0.4828	0	92	1	2	169	2482	7758	1589	100	32731	7796	2349	736	7511	738	7511	2,(0,0,2)
E_S_V_A.gaa.ctg.fa.fas	994	2	2790781	2841116	4	903	905	25	25	0	793	633	79673	2.8043	13538	0.4851	0	92	1	1	182	2469	6830	1641	100	37109	6936	2322	765	6803	766	6803	2,(0,0,2)
E_V_S_A.gaa.ctg.fa.fas	998	2	2791239	2841116	4	904	906	26	26	0	792	635	79601	2.8018	13538	0.485	0	95	1	1	182	2469	6830	1640	100	37109	6936	2322	766	6803	767	6803	2,(0,0,2)
S_V_A_E.gaa.ctg.fa.fas	960	2	2792927	2841116	10	903	905	44	44	0	844	641	75956	2.6735	14757	0.5284	0	61	1	4	171	2480	6398	1616	100	26969	6440	2351	780	6360	781	6355	3,(0,0,3)
V_E_S_A.gaa.ctg.fa.fas	1201	2	2798344	2841116	4	1104	1106	58	58	0	998	835	79219	2.7883	17817	0.6367	0	98	1	1	225	2426	5329	1319	100	22892	5335	2248	943	5322	945	5322	2,(0,0,2)
V_E_A_S.gaa.ctg.fa.fas	1202	2	2798250	2841116	4	1098	1100	55	55	0	992	829	80446	2.8315	17694	0.6323	0	105	1	1	224	2427	5329	1319	100	22892	5335	2248	941	5322	943	5322	2,(0,0,2)
V_A_S_E.gaa.ctg.fa.fas	1203	2	2798480	2841116	4	1104	1106	134	134	0	996	830	79769	2.8077	17762	0.6347	0	100	1	1	224	2427	5329	1319	100	22892	5335	2248	941	5322	943	5322	2,(0,0,2)

[^] Please note that the ContigN50 calculated by Mauve Assembly Metrics is incorrect (off-by-one error). We have followed the definition of N50 (A contig N50 is calculated by first ordering every contig by length from longest to shortest. Next, starting from the longest contig, the lengths of each contig are summed, until this running sum equals one-half of the total length of all contigs in the assembly. The contig N50 of the assembly is the length of the shortest contig in this list. ref) to calculate N50s. GAGE's N50 was calculated using the total reference genome length rather than the sum total of contig lengths. The GAGE's cor.N50 values were computed after correcting contigs by breaking them at each error.