E coli 100 all2

Revision as of 15 September 2012 00:30 by admin (Comments | Contribs) n
Name NumContigs NumRefReplicons NumAssemblyBases NumReferenceBases NumLCBs DCJ_Distance NumDCJBlocks NumSNPs NumMisCalled NumUnCalled NumGapsRef NumGapsAssembly TotalBasesMissed PercBasesMissed ExtraBases PercExtraBases MissingChromosomes ExtraContigs NumSharedBoundaries NumInterLcbBoundaries BrokenCDS IntactCDS ContigN50 ContigN90 MinContigLength MaxContigLength Blast N50 cor.Units cor.N50 Error,(Indel>=5,Inv,Rel) '
A_E.m2.fasta 115 1 4621932 4639675 2 97 98 78 78 0 121 109 58491 1.2607 22851 0.4944 0 18 1 0 64 4256 81936 25717 198 222525 4234 114 81936 120 70581 8,(5,0,3)
A_S.m2.fasta 137 1 4651710 4639675 2 111 112 269 269 0 142 126 68144 1.4687 62523 1.3441 0 26 1 0 80 4240 71818 24405 113 222417 4232 122 76987 129 62530 9,(6,0,3)
A_V.m2.fasta 109 1 4561228 4639675 10 98 100 152 152 0 125 116 169693 3.6574 45947 1.0073 0 14 1 4 74 4246 80921 25721 163 222411 4155 107 83032 121 69083 13,(5,3,5)
E_A.m2.fasta 114 1 4603015 4639675 2 96 97 75 75 0 120 108 76532 1.6495 21975 0.4774 0 18 1 0 62 4258 81936 25717 198 222525 4221 113 81936 119 70581 8,(5,0,3)
E_S.m2.fasta 225 1 4603180 4639675 2 189 190 169 169 0 170 167 104866 2.2602 27739 0.6026 0 35 1 0 92 4228 43550 10813 151 116269 4164 221 43550 222 41922 3,(1,1,1)
E_V.m2.fasta 190 1 4594054 4639675 14 174 177 148 148 0 161 163 108118 2.3303 30522 0.6644 0 22 1 4 87 4233 47048 12130 149 161826 4169 189 47643 201 44201 12,(4,6,2)
S_A.m2.fasta 135 1 4700242 4639675 2 107 108 250 250 0 134 122 69877 1.5061 62227 1.3239 0 28 1 0 78 4242 71817 24405 115 222416 4232 122 76987 127 64914 8,(5,0,3)
S_E.m2.fasta 221 1 4602753 4639675 2 189 190 284 284 0 173 167 103100 2.2221 27959 0.6074 0 32 1 0 91 4229 44099 10813 151 116269 4163 217 44099 219 42370 3,(1,1,1)
S_V.m2.fasta 211 1 4519527 4639675 9 178 180 164 164 0 179 182 191337 4.1239 31657 0.7004 0 35 1 3 82 4238 47039 11721 150 161836 4119 202 45908 215 44098 14,(5,5,4)
V_A.m2.fasta 107 1 4497254 4639675 16 97 99 181 181 0 129 114 232438 5.0098 44805 0.9963 0 15 1 8 75 4245 80921 26897 163 222411 4095 106 83033 119 69083 13,(5,3,5)
V_E.m2.fasta 190 1 4596978 4639675 18 178 181 168 168 0 167 170 104187 2.2456 29759 0.6474 0 21 1 5 84 4236 47643 12130 149 161826 4171 189 47643 201 45414 12,(4,6,2)
V_S.m2.fasta 214 1 4565564 4639675 13 183 185 224 224 0 182 187 100680 2.17 11231 0.246 0 36 1 5 83 4237 47746 11721 150 161837 4169 201 47746 214 47039 14,(5,5,4)
A_E.gaa.fa.fas 192 1 4647990 4639675 2 116 117 163 87 76 146 118 47994 1.0344 25214 0.5425 0 76 1 0 73 4247 66424 20705 100 222524 4244 135 68560 134 68561 3,(0,0,3)
A_S.gaa.fa.fas 190 1 4644821 4639675 2 114 115 200 124 76 147 120 49705 1.0713 24083 0.5185 0 76 1 0 76 4244 68584 22153 102 222412 4246 132 69083 131 69083 3,(0,0,3)
A_V.gaa.fa.fas 187 1 4646249 4639675 2 113 114 176 101 75 149 116 49027 1.0567 23904 0.5145 0 74 1 0 74 4246 71815 22180 102 222412 4248 131 76986 131 71810 5,(2,0,3)
E_A.gaa.fa.fas 421 1 4611298 4639675 2 329 330 35 35 0 279 269 70734 1.5245 11034 0.2393 0 92 1 0 143 4177 24191 6689 100 104739 4058 377 24375 359 24375 2,(1,0,1)
E_S.gaa.fa.fas 424 1 4593644 4639675 2 333 334 63 63 0 282 278 79938 1.7229 7850 0.1709 0 91 1 0 144 4176 24389 6676 100 104748 4056 377 24389 372 24389 3,(1,1,1)
E_V.gaa.fa.fas 423 1 4596515 4639675 2 330 331 69 69 0 287 274 79891 1.7219 10044 0.2185 0 93 1 0 144 4176 24382 6675 100 104739 4054 378 24382 366 24378 3,(1,1,1)
S_A.gaa.fa.fas 559 1 4632385 4639675 2 273 274 118 118 0 246 259 89349 1.9258 11441 0.247 0 286 1 0 109 4211 31788 7901 100 106314 4122 355 31849 331 31845 3,(1,0,2)
S_E.gaa.fa.fas 561 1 4610906 4639675 2 272 273 166 166 0 245 252 99902 2.1532 8092 0.1755 0 289 1 0 109 4211 31913 7901 100 105667 4111 357 32166 352 32167 3,(1,0,2)
S_V.gaa.fa.fas 562 1 4602062 4639675 2 275 276 212 212 0 252 261 108734 2.3436 7976 0.1733 0 287 1 0 111 4209 31788 7901 100 105719 4109 357 31837 355 31837 3,(1,0,2)
V_A.gaa.fa.fas 196 1 4638405 4639675 14 128 130 237 158 79 148 143 55741 1.2014 20672 0.4457 0 75 1 4 69 4251 71909 18783 149 215971 4229 161 77822 154 68585 15,(5,5,5)
V_E.gaa.fa.fas 265 1 4594601 4639675 15 190 192 139 106 33 179 178 85057 1.8333 10168 0.2213 0 81 1 6 85 4235 47048 11188 100 161826 4174 228 47048 235 44201 14,(5,5,4)
V_S.gaa.fa.fas 267 1 4579080 4639675 18 202 204 184 149 35 189 201 92125 1.9856 5833 0.1274 0 74 1 6 83 4237 47039 11192 149 161836 4176 229 47039 242 44098 16,(4,7,5)