H volc all2

Revision as of 21 November 2012 20:39 by admin (Comments | Contribs)
Name NumContigs NumRefReplicons NumAssemblyBases NumReferenceBases NumLCBs DCJ_Distance NumDCJBlocks NumSNPs NumMisCalled NumUnCalled NumGapsRef NumGapsAssembly TotalBasesMissed PercBasesMissed ExtraBases PercExtraBases MissingChromosomes ExtraContigs NumSharedBoundaries NumInterLcbBoundaries BrokenCDS IntactCDS ContigN50 ContigN90 MinContigLength MaxContigLength Blast Units(>200) N50 cor.Units cor.N50 Error,(Indel>=5,Inv,Rel)
1_2.m2.fa 88 5 4044409 4012900 15 88 93 1103 558 545 235 121 86674 2.1599 112904 2.7916 0 5 1 8 134 3881 137837 20480 447 289094 3982 88 146574 106 94894 17,(13,0,4)
1_3.m2.fa 85 5 3942969 4012900 23 88 91 1024 165 859 448 164 153460 3.8242 85633 2.1718 0 5 0 15 218 3797 150060 17200 263 312972 3917 85 169911 307 27595 215,(204,6,5)
2_1.m2.fa 87 5 4044428 4012900 15 84 89 1109 564 545 228 120 89780 2.2373 112699 2.7865 0 7 1 9 133 3882 137837 20480 447 289095 3981 87 146572 107 94273 19,(15,0,4)
2_3.m2.fa 363 5 4517347 4012900 97 398 403 2476 1136 1340 955 695 404544 10.0811 860808 19.0556 0 3 1 57 431 3584 22506 6499 291 72168 3667 363 25451 824 9141 403,(383,6,14)
3_1.m2.fa 85 5 3942775 4012900 31 92 97 1089 248 841 456 172 154926 3.8607 87783 2.2264 0 4 0 18 221 3794 150060 17200 263 312956 3917 85 169911 308 27758 215,(203,6,6)
3_2.m2.fa 363 5 4517334 4012900 99 399 405 2500 1173 1327 949 696 399668 9.9596 864926 19.1468 0 3 1 57 429 3586 22508 6499 291 72168 3665 363 25451 826 9141 406,(383,8,15)
1_2.gaa.fa 160 5 3950416 4012900 10 111 116 83 83 0 136 118 121506 3.0279 28424 0.7195 0 49 1 8 34 3981 123582 13094 100 220464 3960 143 123582 132 121295 8,(3,0,5)
1_3.gaa.fa 154 5 3933663 4012900 10 113 118 62 61 1 141 121 113135 2.8193 6382 0.1622 0 42 1 7 39 3976 127563 11511 100 217359 3966 142 137160 136 127563 9,(3,1,5)
2_1.gaa.fa 1474 5 3884602 4012900 381 1526 1535 2268 742 1526 1439 1404 185093 4.6124 16986 0.4373 0 143 1 180 424 3591 11685 2033 100 73489 3238 916 11146 1203 6467 200,(153,1,46)
2_3.gaa.fa 1434 5 3963125 4012900 367 1426 1435 2318 857 1461 1413 1355 203176 5.0631 108599 2.7402 0 192 1 177 424 3591 16439 2126 100 62580 3294 876 16398 1186 7361 217,(169,0,48)
3_1.gaa.fa 402 5 3895840 4012900 66 408 413 1599 1042 557 884 788 149223 3.7186 24522 0.6294 0 19 1 39 381 3634 18586 5207 101 90775 3585 401 17624 902 7641 493,(474,8,11)
3_2.gaa.fa 534 5 3980988 4012900 70 546 551 1467 904 563 1005 916 177185 4.4154 141339 3.5503 0 15 1 41 409 3606 15438 4350 100 68263 3513 493 15438 1012 6972 494,(473,8,13)