E coli 36 all2

Revision as of 25 February 2013 23:55 by admin (Comments | Contribs)
Name NumContigs NumRefReplicons NumAssemblyBases NumReferenceBases NumLCBs DCJ_Distance NumDCJBlocks NumSNPs NumMisCalled NumUnCalled NumGapsRef NumGapsAssembly TotalBasesMissed PercBasesMissed ExtraBases PercExtraBases MissingChromosomes ExtraContigs NumSharedBoundaries NumInterLcbBoundaries BrokenCDS IntactCDS ContigN50 ContigN90 MinContigLength MaxContigLength !N50 Blast Units(>200) N50 cor.Units cor.N50 Error,(Indel>=5,Inv,Rel)
A_C.m2.fasta 118 1 4632801 4639675 4 102 103 310 310 0 120 108 60508 1.3041 33636 0.726 0 17 1 1 52 4268 96511 25328 100 222423 105944 4269 105 105944 112 95959 7,(5,0,2)
A_E.m2.fasta 80 1 4622336 4639675 2 69 70 246 246 0 85 85 48361 1.0423 22945 0.4964 0 11 1 0 51 4269 119107 35440 122 226190 126232 4275 78 126232 89 113511 12,(9,0,3)
A_S.m2.fasta 128 1 4627108 4639675 8 112 115 350 350 0 130 124 55903 1.2049 29806 0.6442 0 19 1 1 56 4264 92932 25328 105 268389 96511 4250 108 96511 115 92933 7,(6,0,1)
A_V.m2.fasta 116 1 4661531 4639675 2 96 97 357 357 0 117 118 74219 1.5997 73288 1.5722 0 20 1 0 56 4264 105944 26693 100 222423 107040 4252 99 107040 107 95959 9,(7,0,2)
C_A.m2.fasta 118 1 4632801 4639675 2 101 102 297 297 0 117 108 60609 1.3063 38416 0.8292 0 17 1 0 54 4266 96511 25328 100 222423 105944 4269 105 105944 112 95959 7,(5,0,2)
C_E.m2.fasta 104 1 4587525 4639675 5 94 95 66 66 0 103 91 100426 2.1645 38321 0.8353 0 11 1 2 45 4275 101122 24930 123 209804 105835 4261 101 105835 108 101122 7,(3,2,2)
C_S.m2.fasta 327 1 4536804 4639675 9 293 294 124 124 0 290 288 128041 2.7597 4775 0.1053 0 36 1 4 59 4261 29937 8447 108 107343 30103 4223 286 29775 287 28466 2,(0,1,1)
C_V.m2.fasta 179 1 4589403 4639675 7 146 147 174 174 0 159 160 128909 2.7784 41861 0.9121 0 35 1 3 57 4263 63294 15280 100 184379 63512 4247 154 63512 163 60714 9,(6,0,3)
E_A.m2.fasta 80 1 4622436 4639675 2 70 71 244 244 0 85 85 48894 1.0538 24574 0.5316 0 10 1 0 52 4268 119107 35440 122 226190 126232 4275 78 126232 89 113511 12,(10,0,2)
E_C.m2.fasta 105 1 4587576 4639675 5 94 95 66 66 0 102 90 83511 1.7999 21336 0.4651 0 12 2 2 49 4271 101133 24930 123 209804 105835 4261 102 101133 108 101133 6,(2,2,2)
E_S.m2.fasta 135 1 4568724 4639675 2 121 122 93 93 0 119 110 84290 1.8167 4832 0.1058 0 14 1 0 66 4254 77079 18177 122 209786 77696 4226 131 77696 134 77079 5,(2,1,2)
E_V.m2.fasta 118 1 4612692 4639675 2 102 103 110 110 0 103 98 115498 2.4894 79703 1.7279 0 16 1 0 59 4261 86507 24325 122 209787 86974 4221 114 86974 120 83136 8,(5,1,2)
S_A.m2.fasta 128 1 4627108 4639675 11 113 117 346 346 0 131 126 55948 1.2059 30419 0.6574 0 20 1 1 55 4265 92932 25328 105 268389 96511 4250 108 96511 115 92933 7,(6,0,1)
S_C.m2.fasta 326 1 4536681 4639675 10 296 297 159 159 0 294 291 125769 2.7107 4857 0.1071 0 33 1 5 59 4261 29937 8447 108 107343 30103 4223 285 29775 286 28466 2,(0,1,1)
S_E.m2.fasta 135 1 4568686 4639675 2 121 122 88 88 0 119 110 84235 1.8155 4739 0.1037 0 14 1 0 65 4255 77079 18177 122 209786 77696 4226 131 77696 134 77079 5,(2,1,2)
S_V.m2.fasta 243 1 4549600 4639675 2 193 194 246 246 0 204 194 115159 2.482 3408 0.0749 0 50 1 0 72 4248 56801 12713 103 166923 57725 4202 197 56801 205 54360 9,(6,0,3)
V_A.m2.fasta 116 1 4661902 4639675 2 96 97 349 349 0 119 119 74234 1.6 73676 1.5804 0 20 1 0 57 4263 105944 26693 100 222423 107040 4252 99 107040 107 95959 9,(7,0,2)
V_C.m2.fasta 181 1 4591015 4639675 6 147 148 236 236 0 161 165 131013 2.8238 45805 0.9977 0 36 1 2 58 4262 63294 15280 100 184379 63512 4247 155 63512 163 60714 9,(6,0,3)
V_E.m2.fasta 117 1 4608607 4639675 2 101 102 120 120 0 108 97 112002 2.414 72122 1.5649 0 16 1 0 58 4262 86974 24325 122 209787 96641 4221 113 96641 119 86505 8,(5,1,2)
V_S.m2.fasta 245 1 4550043 4639675 2 190 191 133 133 0 198 185 115722 2.4942 3563 0.0783 0 55 1 0 72 4248 56801 12713 103 166923 57725 4202 198 56801 207 54360 9,(5,0,4)
A_C.gaa.fa.fas 140 1 4627307 4639675 2 111 112 345 311 34 124 121 57571 1.2408 29878 0.6457 0 29 1 0 57 4263 92933 25329 100 222425 96511 4256 110 96511 116 92933 6,(5,0,1)
A_E.gaa.fa.fas 136 1 4638015 4639675 2 105 106 361 327 34 117 113 54792 1.1809 28878 0.6226 0 31 1 0 57 4263 92933 25197 100 222425 96511 4258 111 96511 116 92933 6,(5,0,1)
A_S.gaa.fa.fas 135 1 4626731 4639675 2 109 110 370 336 34 122 119 57623 1.242 29389 0.6352 0 26 1 0 57 4263 92933 25329 100 222425 96511 4250 110 96511 116 92933 6,(5,0,1)
A_V.gaa.fa.fas 134 1 4626634 4639675 2 107 108 370 336 34 123 119 57749 1.2447 29366 0.6347 0 27 1 0 57 4263 92933 26096 100 222425 96511 4249 109 96511 116 92933 7,(5,0,2)
C_A.gaa.fa.fas 380 1 4587208 4639675 11 298 300 286 286 0 293 282 104200 2.2458 12316 0.2685 0 87 1 3 64 4256 28450 8495 100 107342 29767 4241 288 28450 280 28036 2,(0,1,1)
C_E.gaa.fa.fas 379 1 4555312 4639675 5 296 297 92 92 0 279 278 123665 2.6654 3517 0.0772 0 85 1 1 61 4259 29767 8368 100 107342 29905 4232 288 28450 289 28036 2,(0,1,1)
C_S.gaa.fa.fas 383 1 4550534 4639675 5 305 306 142 142 0 298 296 117524 2.533 4222 0.0928 0 80 1 1 62 4258 29775 8368 100 107343 29937 4228 288 28466 290 28036 2,(0,1,1)
C_V.gaa.fa.fas 382 1 4550334 4639675 5 299 300 122 122 0 284 284 116676 2.5147 3551 0.078 0 85 1 1 61 4259 29767 8368 100 107342 29905 4230 288 28577 290 28036 2,(0,1,1)
E_A.gaa.fa.fas 210 1 4602464 4639675 2 151 152 43 43 0 129 127 64510 1.3904 10756 0.2337 0 59 1 0 65 4255 54405 13156 100 186686 58030 4210 181 58030 179 52796 3,(2,0,1)
E_C.gaa.fa.fas 210 1 4570226 4639675 2 152 153 15 15 0 137 122 86539 1.8652 2349 0.0514 0 58 1 0 65 4255 54405 13654 100 186686 57790 4192 181 57790 186 52796 5,(2,2,1)
E_S.gaa.fa.fas 211 1 4571238 4639675 2 153 154 42 42 0 139 133 86271 1.8594 2978 0.0651 0 58 1 0 67 4253 54406 13654 100 186686 57790 4192 182 54406 186 52818 4,(2,1,1)
E_V.gaa.fa.fas 211 1 4570155 4639675 2 153 154 29 29 0 135 125 86669 1.868 2344 0.0513 0 58 1 0 66 4254 54420 13651 100 186686 57790 4191 182 54420 186 52796 4,(2,1,1)
S_A.gaa.fa.fas 552 1 4578180 4639675 2 463 464 63 63 0 449 406 102783 2.2153 10636 0.2323 0 89 1 0 102 4218 17902 5383 100 103369 17944 4146 449 17892 439 17892 1,(0,0,1)
S_C.gaa.fa.fas 558 1 4552640 4639675 2 463 464 48 48 0 449 416 133055 2.8678 7486 0.1644 0 95 1 0 100 4220 17902 5390 100 103374 17944 4143 449 17892 450 17892 1,(0,0,1)
S_E.gaa.fa.fas 553 1 4553014 4639675 2 465 466 35 35 0 451 401 120654 2.6005 6909 0.1517 0 88 1 0 100 4220 17902 5383 100 103369 17944 4132 449 17892 450 17892 1,(0,0,1)
S_V.gaa.fa.fas 554 1 4550719 4639675 2 467 468 56 56 0 458 410 123110 2.6534 7263 0.1596 0 87 1 0 99 4221 17902 5384 100 103372 17944 4140 450 17892 451 17892 1,(0,0,1)
V_A.gaa.fa.fas 284 1 4590316 4639675 2 192 193 188 188 0 197 195 91635 1.975 8907 0.194 0 92 1 0 76 4244 52438 12537 100 166094 52474 4210 217 52474 210 49022 8,(5,0,3)
V_C.gaa.fa.fas 289 1 4553691 4639675 2 202 203 139 139 0 205 201 132814 2.8626 3214 0.0706 0 87 1 0 74 4246 52474 12537 100 166107 54373 4199 217 52474 224 49037 8,(5,0,3)
V_E.gaa.fa.fas 284 1 4561370 4639675 2 199 200 147 147 0 198 195 108649 2.3417 3056 0.067 0 85 1 0 75 4245 52474 12537 100 166094 54420 4197 217 52474 221 49028 8,(5,0,3)
V_S.gaa.fa.fas 285 1 4552937 4639675 2 206 207 206 206 0 216 204 115137 2.4816 3295 0.0724 0 79 1 0 75 4245 52478 12537 100 166095 54360 4197 217 52478 222 49024 8,(5,0,3)