H volc all2

Revision as of 14 September 2012 21:13 by admin (Comments | Contribs) n
Name NumContigs NumRefReplicons NumAssemblyBases NumReferenceBases NumLCBs DCJ_Distance NumDCJBlocks NumSNPs NumMisCalled NumUnCalled NumGapsRef NumGapsAssembly TotalBasesMissed PercBasesMissed ExtraBases PercExtraBases MissingChromosomes ExtraContigs NumSharedBoundaries NumInterLcbBoundaries BrokenCDS IntactCDS ContigN50 ContigN90 MinContigLength MaxContigLength Blast Units(>200) N50 cor.Units cor.N50 Error,(Indel>=5,Inv,Rel)
1_2.m2.fa 88 5 4044409 4012900 15 94 97 1116 571 545 231 121 86680 2.16 112937 2.7924 0 4 2 5 128 3810 137837 20480 447 289094 3982 88 146574 106 94894 17,(13,0,4)
1_3.m2.fa 85 5 3942969 4012900 23 87 89 1020 160 860 445 162 158935 3.9606 85484 2.168 0 7 1 15 214 3724 150060 17200 263 312972 3917 85 169911 307 27595 215,(204,6,5)
2_1.m2.fa 87 5 4044428 4012900 14 91 93 1116 569 547 227 124 89124 2.2209 112937 2.7924 0 6 2 5 133 3805 137837 20480 447 289095 3981 87 146572 107 94273 19,(15,0,4)
2_3.m2.fa 363 5 4517347 4012900 103 407 409 2515 1180 1335 963 700 397765 9.9122 862299 19.0886 0 3 0 57 434 3504 22506 6499 291 72168 3667 363 25451 824 9141 403,(383,6,14)
3_1.m2.fa 85 5 3942775 4012900 24 91 93 1036 202 834 447 166 159470 3.9739 87592 2.2216 0 5 1 14 215 3723 150060 17200 263 312956 3917 85 169911 308 27758 215,(203,6,6)
3_2.m2.fa 363 5 4517334 4012900 99 405 408 2275 952 1323 951 695 405157 10.0964 869696 19.2524 0 3 0 54 427 3511 22508 6499 291 72168 3665 363 25451 826 9141 406,(383,8,15)
1_2.gaa.fa - - - - - - - - - - - - - - - - - - - - - - - - - - 3960 143 123582 132 121295 8,(3,0,5)
1_3.gaa.fa 154 5 3933663 4012900 10 115 115 31 30 1 139 120 114581 2.8553 6302 0.1602 0 45 1 7 34 3904 127563 11511 100 217359 3966 142 137160 136 127563 9,(3,1,5)
2_1.gaa.fa 1474 5 3884602 4012900 385 1534 1538 2266 736 1530 1443 1404 185532 4.6234 16623 0.4279 0 143 2 181 418 3520 11685 2033 100 73489 3238 916 11146 1203 6467 200,(153,1,46)
2_3.gaa.fa 1434 5 3963125 4012900 365 1432 1436 2335 874 1461 1412 1354 202847 5.0549 108287 2.7324 0 190 1 175 421 3517 16439 2126 100 62580 3294 876 16398 1186 7361 217,(169,0,48)
3_1.gaa.fa 402 5 3895840 4012900 65 415 415 1573 1027 546 884 787 150021 3.7385 25447 0.6532 0 20 1 36 378 3560 18586 5207 101 90775 3585 401 17624 902 7641 493,(474,8,11)
3_2.gaa.fa 534 5 3980988 4012900 67 550 550 1438 883 555 1003 913 181804 4.5305 146951 3.6913 0 16 1 38 404 3534 15438 4350 100 68263 3513 493 15438 1012 6972 494,(473,8,13)