Saureus 101

Name	NumContigs	NumRefReplicons	NumAssemblyBases	NumReferenceBases	NumLCBs	DCJ_Distance	NumDCJBlocks	NumSNPs	NumMisCalled	NumUnCalled	NumGapsRef	NumGapsAssembly	TotalBasesMissed	PercBasesMissed	ExtraBases	PercExtraBases	MissingChromosomes	ExtraContigs	NumSharedBoundaries	NumInterLcbBoundaries	BrokenCDS	IntactCDS	ContigN50^	ContigN90	MinContigLength	MaxContigLength	N50^	blast	Units(>200)	N50^	cor.Units	cor.N50	Error,(Indel>=5,Inv,Rel)
A_E_V_S_m2.fasta	307	3	2846731	2903081	34	306	310	227	226	1	307	267	93940	3.2359	19688	0.6916	0	16	1	16	118	2575	16024	5100	127	54766	16540	2453	303	15671	322	14883	18,(4,5,9)
E_V_S_A_m2.fasta	300	3	2826976	2903081	37	305	309	335	334	1	315	279	101453	3.4947	17823	0.6305	0	11	1	18	111	2582	17534	5183	127	54766	17735	2451	296	17190	317	15386	22,(7,5,10)
E_S_V_A_m2.fasta	309	3	2850096	2903081	28	306	311	376	375	1	317	281	89663	3.0885	19820	0.6954	0	15	1	12	115	2578	15386	5151	127	54766	15671	2465	305	15386	325	14915	20,(4,7,9)
E_V_A_S_m2.fasta	301	3	2856931	2903081	22	294	297	297	296	1	308	269	94647	3.2602	29993	1.0498	0	15	1	12	110	2583	17190	5100	127	54766	17448	2470	298	17019	316	15671	20,(7,5,8)
S_V_E_A_m2.fasta	310	3	2855782	2903081	22	304	308	200	199	1	313	273	88389	3.0447	23602	0.8265	0	13	1	12	118	2575	15386	5100	127	54766	15671	2468	305	15386	327	14915	24,(8,9,7)
S_A_V_E_m2.fasta	308	3	2843844	2903081	35	311	315	225	224	1	310	280	93937	3.2358	26169	0.9202	0	12	1	17	116	2577	16024	4930	127	54766	16540	2460	303	15904	325	14940	20,(4,6,10)
S_E_A_V_m2.fasta	307	3	2859928	2903081	24	306	310	437	436	1	308	275	85893	2.9587	25821	0.9029	0	14	1	8	117	2576	15386	5194	127	54766	15671	2468	304	15386	323	14940	22,(4,7,11)
V_A_S_E_m2.fasta	294	3	2880241	2903081	28	299	302	220	219	1	297	262	91357	3.1469	62517	2.1705	0	13	1	15	111	2582	17499	5100	127	54766	17602	2486	291	17499	309	16540	18,(5,6,7)
V_E_A_S_m2.fasta	296	3	2850059	2903081	30	293	297	223	222	1	302	268	97697	3.3653	24431	0.8572	0	15	1	15	111	2582	17499	5100	127	54766	17534	2469	293	17448	314	16540	22,(7,5,10)
V_S_E_A_m2.fasta	292	3	2856741	2903081	30	293	298	225	224	1	302	265	68870	2.3723	12529	0.4386	0	12	1	13	115	2578	17843	5213	127	54766	17934	2488	288	17843	316	16547	29,(8,11,10)
A_S_E_V_gaa.fas	686	3	2884802	2903081	14	573	573	194	190	4	461	492	63385	2.1834	20495	0.7104	0	121	1	7	206	2487	9216	2526	100	35461	9229	2320	548	9216	557	9115	10,(2,1,7)
A_V_E_S_gaa.fas	677	3	2883850	2903081	14	578	578	280	276	4	463	500	62793	2.163	20830	0.7223	0	107	1	7	209	2484	9216	2526	100	35461	9229	2320	548	9216	557	9115	10,(2,1,7)
A_E_V_S_gaa.fas	681	3	2884496	2903081	14	578	578	281	277	4	463	500	62774	2.1623	20863	0.7233	0	111	1	7	209	2484	9216	2526	100	35461	9229	2320	548	9216	557	9115	10,(2,1,7)
E_A_V_S_gaa.fas	3311	3	2592748	2903081	6	3122	3124	273	271	2	2919	3015	368641	12.6983	18510	0.7139	0	192	1	2	780	1913	1266	367	100	8709	1269	1072	2684	1099	2684	1098	6,(2,0,4)
E_V_S_A_gaa.fas	3313	3	2593803	2903081	6	3129	3131	460	458	2	2934	3027	367628	12.6634	18919	0.7294	0	187	1	2	780	1913	1265	367	100	8709	1266	1072	2686	1099	2685	1098	5,(2,0,3)
S_E_A_V_gaa.fas	680	3	2891862	2903081	3	512	513	101	99	2	489	454	64686	2.2282	18222	0.6301	0	169	1	2	155	2538	9697	3047	100	47739	9791	2378	509	9697	509	9697	3,(2,0,1)
S_V_A_E_gaa.fas	678	3	2892179	2903081	3	510	511	98	96	2	488	451	65219	2.2465	18841	0.6514	0	169	1	2	154	2539	9697	3047	100	47739	9791	2378	509	9697	509	9697	3,(2,0,1)
V_S_A_E_gaa.fas	494	3	2881938	2903081	16	407	407	204	186	18	395	365	59571	2.052	13064	0.4533	0	96	1	8	142	2551	13398	3911	100	54766	13484	2458	385	13398	398	13138	18,(9,4,5)
V_A_E_S_gaa.fas	494	3	2882993	2903081	16	406	406	165	147	18	394	359	59391	2.0458	12250	0.4249	0	97	1	8	140	2553	13398	3911	100	54766	13484	2458	385	13398	395	13138	17,(9,4,4)
V_A_S_E_gaa.fas	494	3	2882007	2903081	16	408	408	212	194	18	396	364	59268	2.0416	13172	0.457	0	95	1	8	141	2552	13398	3911	100	54766	13484	2458	385	13398	396	13138	18,(9,4,5)

[^] Please note that the ContigN50 calculated by Mauve Assembly Metrics is incorrect (off-by-one error). We have followed the definition of N50 (A contig N50 is calculated by first ordering every contig by length from longest to shortest. Next, starting from the longest contig, the lengths of each contig are summed, until this running sum equals one-half of the total length of all contigs in the assembly. The contig N50 of the assembly is the length of the shortest contig in this list. ref) to calculate N50s. GAGE's N50 was calculated using the total reference genome length rather than the sum total of contig lengths. The GAGE's cor.N50 values were computed after correcting contigs by breaking them at each error.