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Wiki markup for Saureus 101

{| {{table}} | align="center" style="background:#f0f0f0;"|'''Name''' | align="center" style="background:#f0f0f0;"|'''NumContigs''' | align="center" style="background:#f0f0f0;"|'''NumRefReplicons''' | align="center" style="background:#f0f0f0;"|'''NumAssemblyBases''' | align="center" style="background:#f0f0f0;"|'''NumReferenceBases''' | align="center" style="background:#f0f0f0;"|'''NumLCBs''' | align="center" style="background:#f0f0f0;"|'''DCJ_Distance''' | align="center" style="background:#f0f0f0;"|'''NumDCJBlocks''' | align="center" style="background:#f0f0f0;"|'''NumSNPs''' | align="center" style="background:#f0f0f0;"|'''NumMisCalled''' | align="center" style="background:#f0f0f0;"|'''NumUnCalled''' | align="center" style="background:#f0f0f0;"|'''NumGapsRef''' | align="center" style="background:#f0f0f0;"|'''NumGapsAssembly''' | align="center" style="background:#f0f0f0;"|'''TotalBasesMissed''' | align="center" style="background:#f0f0f0;"|'''PercBasesMissed''' | align="center" style="background:#f0f0f0;"|'''ExtraBases''' | align="center" style="background:#f0f0f0;"|'''PercExtraBases''' | align="center" style="background:#f0f0f0;"|'''MissingChromosomes''' | align="center" style="background:#f0f0f0;"|'''ExtraContigs''' | align="center" style="background:#f0f0f0;"|'''NumSharedBoundaries''' | align="center" style="background:#f0f0f0;"|'''NumInterLcbBoundaries''' | align="center" style="background:#f0f0f0;"|'''BrokenCDS''' | align="center" style="background:#f0f0f0;"|'''IntactCDS''' | align="center" style="background:#f0f0f0;"|'''ContigN50^''' | align="center" style="background:#f0f0f0;"|'''ContigN90''' | align="center" style="background:#f0f0f0;"|'''MinContigLength''' | align="center" style="background:#f0f0f0;"|'''MaxContigLength''' | align="center" style="background:#eee685;"|'''N50^''' | align="center" style="background:#eee685;"|'''blast''' | align="center" style="background:#f0f0f0;"|'''Units(>200)''' | align="center" style="background:#f0f0f0;"|'''N50^''' | align="center" style="background:#f0f0f0;"|'''cor.Units''' | align="center" style="background:#f0f0f0;"|'''cor.N50''' | align="center" style="background:#f0f0f0;"|'''Error,(Indel>=5,Inv,Rel)''' |- | A_E_V_S_m2.fasta||307||3||2846731||2903081||34||306||310||227||226||1||307||267||93940||3.2359||19688||0.6916||0||16||1||16||118||2575||16024||5100||127||54766||16540||2453||303||15671||322||14883||18,(4,5,9) |- | E_V_S_A_m2.fasta||300||3||2826976||2903081||37||305||309||335||334||1||315||279||101453||3.4947||17823||0.6305||0||11||1||18||111||2582||17534||5183||127||54766||17735||2451||296||17190||317||15386||22,(7,5,10) |- | E_S_V_A_m2.fasta||309||3||2850096||2903081||28||306||311||376||375||1||317||281||89663||3.0885||19820||0.6954||0||15||1||12||115||2578||15386||5151||127||54766||15671||2465||305||15386||325||14915||20,(4,7,9) |- | E_V_A_S_m2.fasta||301||3||2856931||2903081||22||294||297||297||296||1||308||269||94647||3.2602||29993||1.0498||0||15||1||12||110||2583||17190||5100||127||54766||17448||2470||298||17019||316||15671||20,(7,5,8) |- | S_V_E_A_m2.fasta||310||3||2855782||2903081||22||304||308||200||199||1||313||273||88389||3.0447||23602||0.8265||0||13||1||12||118||2575||15386||5100||127||54766||15671||2468||305||15386||327||14915||24,(8,9,7) |- | S_A_V_E_m2.fasta||308||3||2843844||2903081||35||311||315||225||224||1||310||280||93937||3.2358||26169||0.9202||0||12||1||17||116||2577||16024||4930||127||54766||16540||2460||303||15904||325||14940||20,(4,6,10) |- | S_E_A_V_m2.fasta||307||3||2859928||2903081||24||306||310||437||436||1||308||275||85893||2.9587||25821||0.9029||0||14||1||8||117||2576||15386||5194||127||54766||15671||2468||304||15386||323||14940||22,(4,7,11) |- | V_A_S_E_m2.fasta||294||3||2880241||2903081||28||299||302||220||219||1||297||262||91357||3.1469||62517||2.1705||0||13||1||15||111||2582||17499||5100||127||54766||17602||2486||291||17499||309||16540||18,(5,6,7) |- | V_E_A_S_m2.fasta||296||3||2850059||2903081||30||293||297||223||222||1||302||268||97697||3.3653||24431||0.8572||0||15||1||15||111||2582||17499||5100||127||54766||17534||2469||293||17448||314||16540||22,(7,5,10) |- | V_S_E_A_m2.fasta||292||3||2856741||2903081||30||293||298||225||224||1||302||265||68870||2.3723||12529||0.4386||0||12||1||13||115||2578||17843||5213||127||54766||17934||2488||288||17843||316||16547||29,(8,11,10) |- | A_S_E_V_gaa.fas||686||3||2884802||2903081||14||573||573||194||190||4||461||492||63385||2.1834||20495||0.7104||0||121||1||7||206||2487||9216||2526||100||35461||9229||2320||548||9216||557||9115||10,(2,1,7) |- | A_V_E_S_gaa.fas||677||3||2883850||2903081||14||578||578||280||276||4||463||500||62793||2.163||20830||0.7223||0||107||1||7||209||2484||9216||2526||100||35461||9229||2320||548||9216||557||9115||10,(2,1,7) |- | A_E_V_S_gaa.fas||681||3||2884496||2903081||14||578||578||281||277||4||463||500||62774||2.1623||20863||0.7233||0||111||1||7||209||2484||9216||2526||100||35461||9229||2320||548||9216||557||9115||10,(2,1,7) |- | E_A_V_S_gaa.fas||3311||3||2592748||2903081||6||3122||3124||273||271||2||2919||3015||368641||12.6983||18510||0.7139||0||192||1||2||780||1913||1266||367||100||8709||1269||1072||2684||1099||2684||1098||6,(2,0,4) |- | E_V_S_A_gaa.fas||3313||3||2593803||2903081||6||3129||3131||460||458||2||2934||3027||367628||12.6634||18919||0.7294||0||187||1||2||780||1913||1265||367||100||8709||1266||1072||2686||1099||2685||1098||5,(2,0,3) |- | S_E_A_V_gaa.fas||680||3||2891862||2903081||3||512||513||101||99||2||489||454||64686||2.2282||18222||0.6301||0||169||1||2||155||2538||9697||3047||100||47739||9791||2378||509||9697||509||9697||3,(2,0,1) |- | S_V_A_E_gaa.fas||678||3||2892179||2903081||3||510||511||98||96||2||488||451||65219||2.2465||18841||0.6514||0||169||1||2||154||2539||9697||3047||100||47739||9791||2378||509||9697||509||9697||3,(2,0,1) |- | V_S_A_E_gaa.fas||494||3||2881938||2903081||16||407||407||204||186||18||395||365||59571||2.052||13064||0.4533||0||96||1||8||142||2551||13398||3911||100||54766||13484||2458||385||13398||398||13138||18,(9,4,5) |- | V_A_E_S_gaa.fas||494||3||2882993||2903081||16||406||406||165||147||18||394||359||59391||2.0458||12250||0.4249||0||97||1||8||140||2553||13398||3911||100||54766||13484||2458||385||13398||395||13138||17,(9,4,4) |- | V_A_S_E_gaa.fas||494||3||2882007||2903081||16||408||408||212||194||18||396||364||59268||2.0416||13172||0.457||0||95||1||8||141||2552||13398||3911||100||54766||13484||2458||385||13398||396||13138||18,(9,4,5) |- | |} [^] Please note that the ContigN50 calculated by Mauve Assembly Metrics is incorrect (off-by-one error). We have followed the definition of N50 (''A contig N50 is calculated by first ordering every contig by length from longest to shortest. Next, starting from the longest contig, the lengths of each contig are summed, until this running sum equals one-half of the total length of all contigs in the assembly. The contig N50 of the assembly is the length of the shortest contig in this list.'' [http://www.ncbi.nlm.nih.gov/pubmed/22510764 ref]) to calculate N50s. GAGE's N50 was calculated using the total reference genome length rather than the sum total of contig lengths. The GAGE's cor.N50 values were computed after correcting contigs by breaking them at each error.