GBKParser, a simple tool for parsing basic gene information from a genbank file.
GBKParser, a simple tool for parsing basic gene information from a genbank file.
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Typically, a genome-scale metabolic network reconstruction is begun with its genome annotation. A biochemical-reaction network is reconstructed based on the functions of gene products. Therefore, genomic information deposited in [http://www.ncbi.nlm.nih.gov/genbank/ GenBanak] or [http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] can be effectively used to reconstruct a metabolic network.
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Typically, a genome-scale metabolic network reconstruction is begun with its genome annotation. A biochemical-reaction network is reconstructed based on the functions of gene products. Therefore, genomic information deposited in [http://www.ncbi.nlm.nih.gov/genbank/ GenBank] or [http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] can be effectively used to reconstruct a metabolic network.
GBKParser will parse the useful features, e.g. Locus Tag, Gene name, Coordination, Product and EC Number, from the genbank file. Besides, GBKParser will also generate a FASTA file containing the amino acids sequences and Locus Tag in the header line.
GBKParser will parse the useful features, e.g. Locus Tag, Gene name, Coordination, Product and EC Number, from the genbank file. Besides, GBKParser will also generate a FASTA file containing the amino acids sequences and Locus Tag in the header line.
